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(-) Description

Title :  CRYSTAL STRUCTURE OF ELP3 FROM DEHALOCOCCOIDES MCCARTYI
 
Authors :  S. Glatt, C. W. Mueller
Date :  03 Jun 16  (Deposition) - 03 Aug 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Elongator, Trna Modification, Elp3, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Glatt, R. Zabel, O. Kolaj-Robin, O. F. Onuma, F. Baudin, A. Graziadei, V. Taverniti, T. Y. Lin, F. Baymann, B. Seraphin, K. D. Breunig, C. W. Muller
Structural Basis For Trna Modification By Elp3 From Dehalococcoides Mccartyi.
Nat. Struct. Mol. Biol. V. 23 794 2016
PubMed-ID: 27455459  |  Reference-DOI: 10.1038/NSMB.3265

(-) Compounds

Molecule 1 - ELP3 FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BTF_573
    Organism Scientific: DEHALOCOCCOIDES MCCARTYI BTF08
    Organism Taxid: 1193806

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
2MSE10Mod. Amino AcidSELENOMETHIONINE
3ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:310 , CYS A:312 , CYS A:315binding site for residue ZN A 501
2AC2SOFTWARECYS A:27 , TYR A:29 , CYS A:30binding site for residue FES A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L7J)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:390 -Gly A:391

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L7J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L7J)

(-) Exons   (0, 0)

(no "Exon" information available for 5L7J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:406
                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..................hhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....eeeeeeeee.....hhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhh.........eeee........hhhhhhhhh......hhhhhhhhhhhhhhh.....eeee.....hhhhh.....eeeeeeeee..eeeeeeeee.....eeeeeeeee...............eeeeeeeee.........hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhh...eee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l7j A   7 TISGVTPVAVmTKPLPCPGKCIYCPTFAATPQSYTPESPAVLRAKSCEYQAYKQVALRLRIIQDmGHPTDKVELIImGGTFLSADITYQYGFIKDCYDALNGVVAGSLEEAKTINETAQHRCVGLCIETRPDICGKAEIQRmIDFGTTRVELGVQmLDDDIYKLVERGHRVSDVAEATCLLREYGLKVHYHWmPGLPGSSPEKDLALSRmVFEDPRFCPDGLKLYPTmVVEGTILEQWWKEGRYTPYPNGTmTGLIADIKALVPPYVRISRVKCRCIRCREYSGEPTLRRLDYPASGGKEIFLSFEDASDTLYGLLRLRIPCASLPVLGQKYGAKTGLVRELHVYGTELSLGHRGLGRKLLAEAECLARDEFGLDSLAILSGVGAREYYRSLGYELVAGYmCKHLD 459
                                    16|       26        36        46        56        66    |   76      | 86        96       106       116       126       136       146 |     156     | 166       176       186       196  |    206       216       226       236       246       256 |     266       276 ||    316 ||    335       345       355       365       375       385       395 ||    413       423       433       443       453|     
                                     17-MSE                                                71-MSE      83-MSE                                                          148-MSE       162-MSE                              199-MSE          216-MSE           234-MSE                 258-MSE             278|      318|                                                                  397|                                             454-MSE 
                                                                                                                                                                                                                                                                                                          309       328                                                                   406
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L7J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L7J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L7J)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5L7J)

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