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(-) Description

Title :  N-ACETYLNEURAMINATE LYASE FROM METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS WITH BOUND SIALIC ACID ALDITOL
 
Authors :  R. A. North, A. J. A. Watson, F. G. Pearce, A. C. Muscroft-Taylor, R. Frie A. J. Fairbanks, R. C. J. Dobson
Date :  25 Jul 16  (Deposition) - 11 Jan 17  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Tim-Barrel, Inhibitor, N-Acetylneuraminate Lyase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. North, A. J. Watson, F. G. Pearce, A. C. Muscroft-Taylor, R. Friemann, A. J. Fairbanks, R. C. Dobson
Structure And Inhibition Of N-Acetylneuraminate Lyase From Methicillin-Resistant Staphylococcus Aureus.
Febs Lett. V. 590 4414 2016
PubMed-ID: 27943302  |  Reference-DOI: 10.1002/1873-3468.12462

(-) Compounds

Molecule 1 - N-ACETYLNEURAMINATE LYASE
    Chains: A, B, C, D
    EC Number: 4.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NANA, SAUSA300_0315
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN USA300)
    Organism Taxid: 367830
    Strain: USA300
    Synonym: NEU5AC LYASE,N-ACETYLNEURAMINATE PYRUVATE-LYASE,N- ACETYLNEURAMINIC ACID ALDOLASE,SIALATE LYASE,SIALIC ACID ALDOLASE, SIALIC ACID LYASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1RCJ4Ligand/Ion(2~{S},4~{S},5~{R},6~{R},7~{S},8~{R})-5-ACETAMIDO-2,4,6,7,8,9-HEXAKIS(OXIDANYL)NONANOIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:11 , TYR A:44 , GLY A:47 , SER A:48 , SER A:49 , LYS A:165 , GLY A:189 , ASP A:191 , GLU A:192 , ILE A:206 , GLY A:207 , SER A:208 , ILE A:243 , ILE A:251 , TYR A:252binding site for residue RCJ A 301
2AC2SOFTWAREALA B:11 , TYR B:44 , GLY B:47 , SER B:48 , SER B:49 , LYS B:165 , GLY B:189 , ASP B:191 , GLU B:192 , ILE B:206 , GLY B:207 , SER B:208 , LEU B:247 , ILE B:251 , TYR B:252binding site for residue RCJ B 301
3AC3SOFTWAREALA C:11 , TYR C:44 , GLY C:47 , SER C:48 , SER C:49 , TYR C:137 , LYS C:165 , GLY C:189 , ASP C:191 , GLU C:192 , GLY C:207 , SER C:208 , ILE C:251 , TYR C:252binding site for residue RCJ C 301
4AC4SOFTWAREALA D:11 , TYR D:44 , GLY D:47 , SER D:48 , SER D:49 , TYR D:137 , LYS D:165 , GLY D:189 , ASP D:191 , GLU D:192 , ILE D:206 , GLY D:207 , SER D:208 , LEU D:247 , ILE D:251 , TYR D:252binding site for residue RCJ D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KZD)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Arg A:271 -Pro A:272
2Arg B:271 -Pro B:272
3Arg C:271 -Pro C:272
4Arg D:271 -Pro D:272

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KZD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KZD)

(-) Exons   (0, 0)

(no "Exon" information available for 5KZD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...........hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhh...eeeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kzd A   2 NKDLKGLYAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQKKQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIRDYYFDIIEATQNNMIIYAISIEQFSELFNHEKIVGVKYTAPNFFLLERIRKAFPDKLILSGFDEMLVQATISGVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILRHRGIDAGLPKRPFKPFNEAHRQTLDQLIAKYDL 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131      |149       159       169       179       189       199       209       219       229       239       249       259       269       279       289    
                                                                                                                                                                  138|                                                                                                                                                  
                                                                                                                                                                   147                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...........hhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhh....eee.........hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhh....eeeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kzd B   2 NKDLKGLYAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQKKQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIRDYYFDIIEATQNNMIIYAISIEQFSELFNHEKIVGVKYTAPNFFLLERIRKAFPDKLILSGFDEMLVQATISGVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILRHRGIDAGLPKRPFKPFNEAHRQTLDQLIAKYDL 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131      |149       159       169       179       189       199       209       219       229       239       249       259       269       279       289    
                                                                                                                                                                  138|                                                                                                                                                  
                                                                                                                                                                   147                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...........hhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhh...eeeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kzd C   2 NKDLKGLYAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQKKQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIRDYYFDIIEATQNNMIIYAISIEQFSELFNHEKIVGVKYTAPNFFLLERIRKAFPDKLILSGFDEMLVQATISGVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILRHRGIDAGLPKRPFKPFNEAHRQTLDQLIAKYDL 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131      |149       159       169       179       189       199       209       219       229       239       249       259       269       279       289    
                                                                                                                                                                  138|                                                                                                                                                  
                                                                                                                                                                   147                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...........hhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh..eeeeee...hhhhhhhhhhhh...eeee.hhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kzd D   2 NKDLKGLYAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQKKQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIRDYYFDIIEATQNNMIIYAISIEQFSELFNHEKIVGVKYTAPNFFLLERIRKAFPDKLILSGFDEMLVQATISGVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILRHRGIDAGLPKRPFKPFNEAHRQTLDQLIAKYDL 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131      |149       159       169       179       189       199       209       219       229       239       249       259       269       279       289    
                                                                                                                                                                  138|                                                                                                                                                  
                                                                                                                                                                   147
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KZD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KZD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KZD)

(-) Gene Ontology  (7, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NANA_STAA3 | Q2FJU9: 5kze
        NANA_STAA8 | Q2G160: 4ah7 4aho 4ahp 4ahq 4ama 5a8g 5kze 5lky

(-) Related Entries Specified in the PDB File

5kze