5KXJ - JenaLib

Title :   CRYSTAL STRUCTURE OF L-ASPARTATE OXIDASE FROM SALMONELLA TYPHIMURIUM IN THE COMPLEX WITH SUBSTRATE L-ASPARTATE

Authors :   Y. Kim, J. Osipiuk, R. Mulligan, M. Makowska-Grzyska, N. Maltseva, S. S M. Gu, W. F. Anderson, A. Joachimiak, Center For Structural Genomi Infectious Diseases (Csgid)

Date :   20 Jul 16 (Deposition) - 03 Aug 16 (Release) - 08 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.87

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: A  (6x)

Keywords :   Alpha-Beta Structure, Alpha-Beta-Alpha Sandwich, Oxidoreductase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, J. Osipiuk, R. Mulligan, M. Makowska-Grzyska, N. Maltseva, S. Shatsman, M. Gu, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of L-Aspartate Oxidase From Salmonella Typhimurium In The Complex With Substrate L-Aspartate
To Be Published
PubMed: search

Compounds

Molecule 1 - L-ASPARTATE OXIDASE
	Chains	:	A
	EC Number	:	1.4.3.16
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG28
	Expression System Strain	:	BL21(DE3) MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NADB, STM2641
	Organism Scientific	:	SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
	Organism Taxid	:	99287
	Strain	:	LT2 / SGSC1412 / ATCC 700720
	Synonym	:	LASPO,QUINOLINATE SYNTHASE B

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A
Biological Unit 3 (6x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (4, 10)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	ASP	1	Mod. Amino Acid	ASPARTIC ACID
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	3	Ligand/Ion	GLYCEROL
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 10)

No.	Name	Count	Type	Full Name
1	ASP	1	Mod. Amino Acid	ASPARTIC ACID
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	3	Ligand/Ion	GLYCEROL
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 20)

No.	Name	Count	Type	Full Name
1	ASP	2	Mod. Amino Acid	ASPARTIC ACID
2	EDO	10	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	6	Ligand/Ion	GLYCEROL
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 60)

No.	Name	Count	Type	Full Name
1	ASP	6	Mod. Amino Acid	ASPARTIC ACID
2	EDO	30	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	18	Ligand/Ion	GLYCEROL
4	SO4	6	Ligand/Ion	SULFATE ION

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:76 , ILE A:77 , CYS A:78 , HOH A:839	binding site for residue GOL A 601
02	AC2	SOFTWARE	ILE A:63 , GLU A:84 , SER A:88 , SER A:146 , GLN A:149 , ASN A:150	binding site for residue GOL A 602
03	AC3	SOFTWARE	GLN A:212 , TYR A:213 , THR A:214 , ASN A:255 , ARG A:444	binding site for residue GOL A 603
04	AC4	SOFTWARE	ARG A:26 , THR A:92 , TRP A:96 , TRP A:400 , EDO A:606 , HOH A:747 , HOH A:784	binding site for residue EDO A 604
05	AC5	SOFTWARE	HIS A:81 , PHE A:85 , GLN A:149 , ASN A:150 , HIS A:151 , PRO A:152 , ASP A:361 , HOH A:728 , HOH A:778	binding site for residue EDO A 605
06	AC6	SOFTWARE	GLU A:29 , TRP A:96 , GLN A:100 , EDO A:604 , HOH A:774	binding site for residue EDO A 606
07	AC7	SOFTWARE	ASP A:164 , ARG A:230 , ARG A:491 , HOH A:879 , HOH A:887	binding site for residue EDO A 607
08	AC8	SOFTWARE	LYS A:198 , VAL A:413 , HIS A:414 , SER A:415	binding site for residue SO4 A 608
09	AC9	SOFTWARE	ARG A:234 , GLU A:424 , ILE A:530 , HOH A:756	binding site for residue EDO A 609
10	AD1	SOFTWARE	GLY A:17 , ALA A:18 , ALA A:19 , GLY A:374 , GLU A:375 , SER A:391 , LEU A:392 , CYS A:395 , HOH A:704 , HOH A:710 , HOH A:712 , HOH A:739 , HOH A:752 , HOH A:844	binding site for residue ASP A 610

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:482
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeeeeee..hhhhhhhhhhhhh...eeee......hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh....eeee..eeeeeeee.hhhh......eeeeeeee....eeeeeeeeeeee....hhhhh....hhhhh.hhhhhhhhhhh..ee....eeeeeeee...........hhhhhh..eee......hhhhhh.hhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhh........eeeeeeeeee..eee...........eee....ee..........hhhhhhhhhhhhhhhhhhhhhhhhh.....ee........hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh......................ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kxj A   1 MMTTPELSCDVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVDSIASHVEDTLIAGAGICDRHAVEFVASNARTCVQWLIDQGVKEVETTLVSRAQNHPNIQVLERSNAVDLIISDKMGLPGPRRVVGAWIWNRNKEWVETCHAKSVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGSRFMPDVDERGELAPRDIVARAIDHEMKQLGADCMFLDISHKPDDFVRQHFPMIYAKLLDLGMDLTKEPIPVVPAAHYTCGGVVVDDYGRTDVDGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAMDIDRRMPSVHSVDALPAWDESRVENADERVVIQHNWHELRLLMWDYVGIVRTTKRLERALRRITMLQQEIDEYYANFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPQQLAESGPSILSPLTD 610
                                    10        20        30        40||      69        79        89        99  ||   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534||
                                                                   41|                                      102|                                                                                                                                                                                                                                                                                                                                                                                                          535|
                                                                    61                                       138                                                                                                                                                                                                                                                                                                                                                                                                           610

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

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