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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DROSOPHILA PUMILIO RNA-BINDING DOMAIN IN COMPLEX WITH HUNCHBACK RNA
 
Authors :  C. Qiu, T. M. T. Hall
Date :  23 Jun 16  (Deposition) - 17 Aug 16  (Release) - 24 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.14
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rna-Binding Protein, Rna-Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. A. Weidmann, C. Qiu, R. M. Arvola, T. F. Lou, J. Killingsworth, Z. T. Campbell, T. M. Tanaka Hall, A. C. Goldstrohm
Drosophila Nanos Acts As A Molecular Clamp That Modulates The Rna-Binding And Repression Activities Of Pumilio.
Elife V. 5 2016
PubMed-ID: 27482653  |  Reference-DOI: 10.7554/ELIFE.17096

(-) Compounds

Molecule 1 - MATERNAL PROTEIN PUMILIO
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1091-1426
    Gene: PUM, CG9755
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
 
Molecule 2 - RNA (5'-R(*UP*GP*UP*AP*CP*AP*UP*A)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:1222 , HIS A:1223 , VAL A:1224 , LEU A:1225 , HOH A:1653 , HOH A:1779binding site for residue EDO A 1501
2AC2SOFTWAREGLY A:1091 , ASN A:1106 , HOH A:1610 , HOH A:1628 , HOH A:1685 , U B:3 , A B:4binding site for residue EDO A 1502
3AC3SOFTWAREARG A:1354 , THR A:1358 , LYS A:1399binding site for residue ACT A 1503
4AC4SOFTWAREARG A:1199 , A B:6 , U B:7binding site for residue ACT A 1504
5AC5SOFTWAREHOH A:1749 , HOH A:1765binding site for residue ACT A 1505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KLA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KLA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KLA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KLA)

(-) Exons   (0, 0)

(no "Exon" information available for 5KLA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5kla A 1090 SGRSRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEK 1426
                                  1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399      1409      1419       


Chain B from PDB  Type:RNA  Length:8
                                         
                5kla B    1 UGUACAUA    8
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KLA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KLA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KLA)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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  5kla
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  PUM_DROME | P25822
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PUM_DROME | P25822: 3h3d 5kl1 5kl8

(-) Related Entries Specified in the PDB File

5kl1 5kl8