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(-) Description

Title :  FITTED STRUCTURE OF RUBELLA VIRUS CAPSID PROTEIN
 
Authors :  V. Mangala Prasad, T. Klose, M. G. Rossmann
Date :  14 Jun 16  (Deposition) - 10 May 17  (Release) - 14 Jun 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  35.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rubella Virus Capsid Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Mangala Prasad, T. Klose, M. G. Rossmann
Assembly, Maturation And Three-Dimensional Helical Structur Of The Teratogenic Rubella Virus.
Plos Pathog. V. 13 06377 2017
PubMed-ID: 28575072  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006377

(-) Compounds

Molecule 1 - CAPSID PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: ROSETTA-2 (DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 9-277
    Organism Common: RUBV
    Organism Scientific: RUBELLA VIRUS
    Organism Taxid: 11041

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5KHF)

(-) Sites  (0, 0)

(no "Site" information available for 5KHF)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:27 -B:71
2A:71 -B:27

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:72 -Pro A:73
2Asp B:59 -Gly B:60
3Gly B:72 -Pro B:73
4Trp B:94 -Gly B:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KHF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KHF)

(-) Exons   (0, 0)

(no "Exon" information available for 5KHF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee......eeeeeeeeee............hhhhhh.......hhhhhhhhh.....eeeee......eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 5khf A  24 TEACVTSWLWSEGEGAVFYRVDLHFTNLGTPPLDEDGRWDPALMYNPCGPEPPAHVVRAYNQPAGDVRGVWGKGERTYAEQDFRVGGTRWHRLLRMPV 121
                                    33        43        53        63        73        83        93       103       113        


Chain B from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......eeeeeeeeee.........................hhhhhhhhhh.....eeeee...eeeeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 5khf B  24 TEACVTSWLWSEGEGAVFYRVDLHFTNLGTPPLDEDGRWDPALMYNPCGPEPPAHVVRAYNQPAGDVRGVWGKGERTYAEQDFRVGGTRWHRLLRMPV 121
                                    33        43        53        63        73        83        93       103       113
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KHF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KHF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KHF)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5khf)
 
  Cis Peptide Bonds
    Asp B:59 - Gly B:60   [ RasMol ]  
    Gly A:72 - Pro A:73   [ RasMol ]  
    Gly B:72 - Pro B:73   [ RasMol ]  
    Trp B:94 - Gly B:95   [ RasMol ]  
 

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  5khf
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  POLS_RUBVT | P07566
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLS_RUBVT | P07566: 5khe

(-) Related Entries Specified in the PDB File

5khc 5khe