5KH6 - JenaLib

Title :   SETDB1 IN COMPLEX WITH A FRAGMENT CANDIDATE

Authors :   J. R. Walker, R. J. Harding, P. Mader, E. Dobrovetsky, A. Dong, P. Collin N. Pearce, J. Brandao-Neto, A. Douangamath, F. Von Delft, P. J. Brown M. Schapira, C. H. Arrowsmith, A. M. Edwards, V. Santhakumar, Structu Genomics Consortium (Sgc)

Date :   14 Jun 16 (Deposition) - 21 Sep 16 (Release) - 21 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym./Biol. Unit : A

Keywords :   Fragment Screening, Structural Genomics Consortium, Sgc, Diamond I04- 1 Xchem, Pandda, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Walker, R. J. Harding, P. Mader, E. Dobrovetsky, A. Dong, P. Collins, N. Pearce, J. Brandao-Neto, A. Douangamath, F. Von Delft P. J. Brown, M. Schapira, C. H. Arrowsmith, A. M. Edwards, V. Santhakumar, Structural Genomics Consortium (Sgc)
Setdb1 In Complex With A Fragment Candidate
To Be Published
PubMed: search

Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1
	Chains	:	A
	EC Number	:	2.1.1.43
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-MHL
	Expression System Strain	:	BL21 (DE3) CODON PLUS
	Expression System Taxid	:	469008
	Fragment	:	TUDOR DOMAIN
	Gene	:	SETDB1, KIAA0067, KMT1E
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ERG-ASSOCIATED PROTEIN WITH SET DOMAIN,ESET,HISTONE H3-K9 METHYLTRANSFERASE 4,H3-K9-HMTASE 4,LYSINE N-METHYLTRANSFERASE 1E,SET DOMAIN BIFURCATED 1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 20)

Sites (20, 20)

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:273 , VAL A:274 , TRP A:275	binding site for residue EDO A 501
02	AC2	SOFTWARE	GLY A:300 , TYR A:301 , GLU A:386 , ARG A:394 , 6SU A:513	binding site for residue DMS A 502
03	AC3	SOFTWARE	LYS A:207 , LYS A:208 , LYS A:211 , LEU A:242 , HIS A:246 , HOH A:693	binding site for residue EDO A 503
04	AC4	SOFTWARE	HIS A:214 , LYS A:215 , HOH A:606 , HOH A:618 , HOH A:619 , HOH A:648 , HOH A:658	binding site for residue SO4 A 504
05	AC5	SOFTWARE	ASP A:270 , GLY A:271 , ASN A:272 , GLN A:273	binding site for residue SO4 A 505
06	AC6	SOFTWARE	THR A:306 , GLN A:307 , SER A:308 , ARG A:384	binding site for residue SO4 A 506
07	AC7	SOFTWARE	ARG A:203 , HOH A:637 , HOH A:715	binding site for residue SO4 A 507
08	AC8	SOFTWARE	PRO A:316 , LYS A:318 , HOH A:634	binding site for residue SO4 A 508
09	AC9	SOFTWARE	ARG A:209 , LYS A:364 , ASP A:381	binding site for residue CL A 509
10	AD1	SOFTWARE	LYS A:318 , SER A:350 , EDO A:514	binding site for residue CL A 510
11	AD2	SOFTWARE	SER A:243 , HIS A:246	binding site for residue CL A 511
12	AD3	SOFTWARE	GLY A:225	binding site for residue CL A 512
13	AD4	SOFTWARE	PHE A:296 , GLY A:300 , ALA A:302 , SER A:328 , CYS A:329 , PHE A:332 , TYR A:389 , DMS A:502 , HOH A:660	binding site for residue 6SU A 513
14	AD5	SOFTWARE	ASN A:245 , ARG A:315 , PRO A:316 , LEU A:317 , CL A:510	binding site for residue EDO A 514
15	AD6	SOFTWARE	LYS A:269 , TYR A:301 , ALA A:302 , TRP A:387 , HOH A:620	binding site for residue PEG A 515
16	AD7	SOFTWARE	GLU A:283 , ASN A:286 , LYS A:288 , TYR A:304 , ARG A:343 , GLY A:372 , SER A:373 , HOH A:719	binding site for residue PEG A 516
17	AD8	SOFTWARE	LYS A:290 , ARG A:292 , ASP A:371 , HOH A:724	binding site for residue PEG A 517
18	AD9	SOFTWARE	GLU A:190 , ASN A:191 , THR A:223	binding site for residue ACT A 518
19	AE1	SOFTWARE	SER A:303 , TYR A:304 , ASP A:371 , TRP A:387 , HOH A:640 , HOH A:650	binding site for residue EDO A 519
20	AE2	SOFTWARE	LYS A:208 , THR A:210 , THR A:212 , HIS A:214 , HOH A:743	binding site for residue GOL A 520

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
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Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.ee..ee...eeeee.....eeeeeeeeeeee..eeeeeeee....eeeee...ee.....hhhhh....eeeeeeee..eeeeeeeeeee.........eeeee....eeeehhh.eee......hhhhhh.hhhhhhhhhhhhhhh............eeeeee..eeeeeeeeeee..eeeeee....eeeeee.....hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kh6 A 190 ENLYFQGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFS 400
                                   199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (22, 22)

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		Tyr A:340 - Pro A:341	[ RasMol ]

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