5KEU - JenaLib

Title :   CRYSTAL STRUCTURE OF A TAURINE DIOXYGENASE FROM BURKHOLDERIA XENOVORANS

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   10 Jun 16 (Deposition) - 22 Jun 16 (Release) - 22 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)
Biol. Unit 3: A  (2x)
Biol. Unit 4: B  (2x)

Keywords :   Ssgcid, Oxidoreductase, Dioxygenase, Burkholderia Xenovorans, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. M. Dranow, D. Lorimer, T. E. Edwards
Crystal Structure Of A Taurine Dioxygenase From Burkholderi Xenovorans
To Be Published
PubMed: search

Compounds

Molecule 1 - TAURINE DIOXYGENASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BXE_C0112
	Organism Scientific	:	BURKHOLDERIA XENOVORANS (STRAIN LB400)
	Organism Taxid	:	266265
	Strain	:	LB400
	Synonym	:	BUXEA.00024.C

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B
Biological Unit 3 (2x)	:	A
Biological Unit 4 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 26)

Asymmetric Unit (3, 26)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	23	Ligand/Ion	FORMIC ACID
3	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 24)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	23	Ligand/Ion	FORMIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 48)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	46	Ligand/Ion	FORMIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (2, 16)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	14	Ligand/Ion	FORMIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 4 (1, 32)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	32	Ligand/Ion	FORMIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (26, 26)

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:274 , ASP A:275	binding site for residue FMT A 401
02	AC2	SOFTWARE	LEU A:108 , THR A:112 , GLY A:113 , LEU A:266 , THR A:269 , HOH A:505 , HOH A:527 , HOH A:602 , HOH A:652 , ARG B:241	binding site for residue FMT A 402
03	AC3	SOFTWARE	ARG A:247 , HOH A:559 , HOH A:583 , HOH A:614 , HOH A:675 , ARG B:247	binding site for residue FMT A 403
04	AC4	SOFTWARE	GLN A:143 , HOH A:518 , HOH A:569 , HOH A:622 , HOH A:707 , GLN B:143 , PRO B:242 , THR B:245 , HOH B:567	binding site for residue FMT A 404
05	AC5	SOFTWARE	GLN A:63 , HOH A:520 , VAL B:286	binding site for residue FMT A 405
06	AC6	SOFTWARE	HOH A:504 , HOH A:575 , HOH A:662 , HOH B:626	binding site for residue FMT A 406
07	AC7	SOFTWARE	HIS A:20 , ARG A:48	binding site for residue FMT A 407
08	AC8	SOFTWARE	ILE A:93 , THR A:142 , ALA A:267 , PRO A:268 , ARG A:278	binding site for residue EDO A 408
09	AC9	SOFTWARE	HIS A:115 , ASP A:117 , HIS A:265 , ASN A:315 , HOH A:533 , HOH A:648	binding site for residue MG A 409
10	AD1	SOFTWARE	HIS B:83 , VAL B:84 , ASP B:85 , FMT B:408	binding site for residue FMT B 401
11	AD2	SOFTWARE	GLN B:143 , HOH B:551 , HOH B:573	binding site for residue FMT B 402
12	AD3	SOFTWARE	PRO A:293 , ASP A:294 , ALA B:156 , ALA B:160 , HOH B:683	binding site for residue FMT B 403
13	AD4	SOFTWARE	LYS B:218 , FMT B:405 , FMT B:411 , HOH B:596	binding site for residue FMT B 404
14	AD5	SOFTWARE	GLU B:229 , FMT B:404 , HOH B:617 , HOH B:712	binding site for residue FMT B 405
15	AD6	SOFTWARE	VAL B:221 , HOH B:728	binding site for residue FMT B 406
16	AD7	SOFTWARE	ASP B:163 , LEU B:165 , ARG B:166 , PRO B:197 , GLY B:292 , ASP B:294 , HOH B:519 , HOH B:640	binding site for residue FMT B 407
17	AD8	SOFTWARE	SER B:92 , TYR B:281 , FMT B:401 , HOH B:504	binding site for residue FMT B 408
18	AD9	SOFTWARE	LEU B:107 , THR B:112 , HOH B:595 , HOH B:679 , HOH B:704	binding site for residue FMT B 409
19	AE1	SOFTWARE	ARG A:241 , THR B:112 , GLY B:113 , THR B:269 , HOH B:582	binding site for residue FMT B 410
20	AE2	SOFTWARE	ARG B:170 , LYS B:218 , FMT B:404 , FMT B:412	binding site for residue FMT B 411
21	AE3	SOFTWARE	THR B:172 , LYS B:218 , FMT B:411 , HOH B:644	binding site for residue FMT B 412
22	AE4	SOFTWARE	VAL B:291 , GLY B:295 , HOH B:547 , HOH B:682	binding site for residue FMT B 413
23	AE5	SOFTWARE	ARG B:48 , HOH B:512	binding site for residue FMT B 414
24	AE6	SOFTWARE	THR B:142 , PRO B:268 , ARG B:278 , HOH B:543	binding site for residue FMT B 415
25	AE7	SOFTWARE	PHE B:58 , HOH B:507 , HOH B:651	binding site for residue FMT B 416
26	AE8	SOFTWARE	HIS B:115 , ASP B:117 , HIS B:265 , ASN B:315 , HOH B:561 , HOH B:676	binding site for residue MG B 417

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeee........hhhhhhhhhhhhhhhheeee.....hhhhhhhhhhh.......ee..eeeeeeee...........ee...........eeeeeeee.......eeeeehhhhhhhhhhhhhhhhhh.eeeeee...eeeeee.eee......eee......eeee...hhhhhhhhhhhhhhhhhhhh.eeee......eeeee...eeee..hhhhhh....eeeeeee.............eeee..hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5keu A  10 PSIQVKPLSAHIGAELHGVDLTRKLDPSEVAQIRAALLRWRVVFFREQFLTHEQHVAFSAQFGEPTLGHVDGHPEVYSISKYQALLRPWTGWHTDVTAALNPPWASILRGVTIPPYGGDTQWTNLALAYEKLSAPLRAFVDGLRGVHRFTPVLVTEHPLVRVHPETGERVLYVSPSFLKSIVGVTPRESEALLELLWEHATRPEFTVRFKWEAGSVAFWDNRATAHLAPTDIFDLDFDRQLYRTTLVGDVPVGPDGRQSVAIEGAAAVALN 315
                                    19        29        39        49        59        69      ||84        94 ||    112       122       132       142       152       162       172||     199       209       219       229       239       249       259       269       279       289       299   ||  314 
                                                                                             76|            96|                                                                 173|                                                                                                             303|      
                                                                                              82            105                                                                  191                                                                                                              309

Chain B from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeee........hhhhhhhhhhhhhhhheeee.....hhhhhhhhhhh....................eee..........ee...........eeeeeeee.......eeeeehhhhhhhhhhhhhhhhhh.eeeeee....eeeeee.eee......eee......eeee...hhhhhhhhhhhhhhhhhhhh.eeee......eeeee...eeee..hhhhhh....eeeeeee.............eeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5keu B  10 PSIQVKPLSAHIGAELHGVDLTRKLDPSEVAQIRAALLRWRVVFFREQFLTHEQHVAFSAQFGEPTLGHPVFGHVDGHPEVYSISQALLRPWTGWHTDVTAALNPPWASILRGVTIPPYGGDTQWTNLALAYEKLSAPLRAFVDGLRGVHRFTPPVLVTEHPLVRVHPETGERVLYVSPSFLKSIVGVTPRESEALLELLWEHATRPEFTVRFKWEAGSVAFWDNRATAHLAPTDIFDLDFDRQLYRTTLVGDVPVGPDGRQSVAIEGSPVSAAAAVALN 315
                                    19        29        39        49        59        69        79        89    || 109       119       129       139       149       159       169    || 195       205       215       225       235       245       255       265       275       285       295       305       315
                                                                                                               94|                                                                  174|                                                                                                                            
                                                                                                               105                                                                   191

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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