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(-) Description

Title :  CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING INFLUENZA A ANTIBODY 31.A.83 IN COMPLEX WITH HEMAGGLUTININ HONG KONG 1968.
 
Authors :  M. G. Joyce, P. V. Thomas, A. K. Wheatley, A. B. Mcdermott, J. R. Mascola,
Date :  01 Jun 16  (Deposition) - 22 Feb 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.51
Chains :  Asym./Biol. Unit :  A,B,C,F,G,H,L,Q,R
Keywords :  Influenza, Multidonor, H5, Universal Influenza Vaccine, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Joyce, A. K. Wheatley, P. V. Thomas, G. Y. Chuang, C. Soto, R. T. Bailer, A. Druz, I. S. Georgiev, R. A. Gillespie, M. Kanekiyo, W. P. Kong, K. Leung, S. N. Narpala, M. S. Prabhakaran, E. S. Yang, B. Zhang, Y. Zhang, M. Asokan, J. C. Boyington, T. Bylund, S. Darko, C. R. Lees, A. Ransier, C. H. Shen, L. Wang, J. R. Whittle, X. Wu, H. M. Yassine, C. Santos, Y. Matsuoka, Y. Tsybovsky, U. Baxa, J. C. Mullikin, K. Subbarao, D. C. Douek, B. S. Graham, R. A. Koup, J. E. Ledgerwood, M. Roederer, L. Shapiro, P. D. Kwong, J. R. Mascola, A. B. Mcdermott
Vaccine-Induced Antibodies That Neutralize Group 1 And Grou 2 Influenza A Viruses.
Cell V. 166 609 2016
PubMed-ID: 27453470  |  Reference-DOI: 10.1016/J.CELL.2016.06.043

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A, C, B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS (A/HONG KONG/1-4-MA21- 1/1968(H3N2))
    Organism Taxid: 506380
    Strain: A/HONG KONG/1-4-MA21-1/1968(H3N2)
 
Molecule 2 - ANTIBODY 31.A.83 FAB HEAVY CHAIN
    Chains: F, H, Q
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - ANTIBODY 31.A.83 FAB LIGHT CHAIN
    Chains: G, L, R
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456789
Asymmetric/Biological Unit : ABCFGHLQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1NAG18Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN C:22binding site for residue NAG C 601
02AC2SOFTWAREPRO A:21 , ASN A:22binding site for Mono-Saccharide NAG A 601 bound to ASN A 22
03AC3SOFTWAREASN A:38 , PRO Q:103 , ILE Q:104binding site for Mono-Saccharide NAG A 602 bound to ASN A 38
04AC4SOFTWAREGLN A:80 , ASN A:81 , GLU A:119 , PHE A:120 , ARG A:150binding site for Mono-Saccharide NAG A 603 bound to ASN A 81
05AC5SOFTWAREASN A:165 , VAL A:244 , SER B:219binding site for Mono-Saccharide NAG A 605 bound to ASN A 165
06AC6SOFTWAREASN A:285 , VAL A:297binding site for Mono-Saccharide NAG A 606 bound to ASN A 285
07AC7SOFTWAREALA A:476 , GLU A:479 , ASN A:483 , THR A:485binding site for Mono-Saccharide NAG A 604 bound to ASN A 483
08AC8SOFTWAREPRO B:21 , ASN B:22binding site for Mono-Saccharide NAG B 601 bound to ASN B 22
09AC9SOFTWAREASN B:38 , PRO H:103 , ILE H:104binding site for Mono-Saccharide NAG B 602 bound to ASN B 38
10AD1SOFTWAREASN B:81 , GLU B:119 , PHE B:120 , ILE B:121binding site for Mono-Saccharide NAG B 603 bound to ASN B 81
11AD2SOFTWAREASN B:165 , SER C:219binding site for Mono-Saccharide NAG B 605 bound to ASN B 165
12AD3SOFTWAREASN B:285 , GLU B:398binding site for Mono-Saccharide NAG B 606 bound to ASN B 285
13AD4SOFTWAREALA B:476 , GLU B:479 , ASN B:483 , THR B:485binding site for Mono-Saccharide NAG B 604 bound to ASN B 483
14AD5SOFTWAREASN C:38 , PRO F:103 , ILE F:104binding site for Mono-Saccharide NAG C 602 bound to ASN C 38
15AD6SOFTWAREASN C:81 , PHE C:120binding site for Mono-Saccharide NAG C 603 bound to ASN C 81
16AD7SOFTWARESER A:219 , ASN C:165binding site for Mono-Saccharide NAG C 605 bound to ASN C 165
17AD8SOFTWAREASN C:285 , VAL C:297binding site for Mono-Saccharide NAG C 606 bound to ASN C 285
18AD9SOFTWAREALA C:476 , GLU C:479 , ASN C:483 , THR C:485binding site for Mono-Saccharide NAG C 604 bound to ASN C 483

(-) SS Bonds  (33, 33)

Asymmetric/Biological Unit
No.Residues
1A:14 -A:466
2A:52 -A:277
3A:64 -A:76
4A:97 -A:139
5A:281 -A:305
6A:473 -A:477
7B:14 -B:466
8B:52 -B:277
9B:64 -B:76
10B:97 -B:139
11B:281 -B:305
12B:473 -B:477
13C:14 -C:466
14C:52 -C:277
15C:64 -C:76
16C:97 -C:139
17C:281 -C:305
18C:473 -C:477
19F:22 -F:96
20F:158 -F:214
21F:234 -G:214
22G:23 -G:88
23G:134 -G:194
24H:22 -H:96
25H:158 -H:214
26H:234 -L:214
27L:23 -L:88
28L:134 -L:194
29Q:22 -Q:96
30Q:158 -Q:214
31Q:234 -R:214
32R:23 -R:88
33R:134 -R:194

(-) Cis Peptide Bonds  (21, 21)

Asymmetric/Biological Unit
No.Residues
1Asn A:54 -Pro A:55
2Asn C:54 -Pro C:55
3Ala F:57 -Thr F:58
4Phe F:164 -Pro F:165
5Glu F:166 -Pro F:167
6Ser G:7 -Pro G:8
7Tyr G:91 -Asn G:92
8Tyr G:140 -Pro G:141
9Asn B:54 -Pro B:55
10Ala H:57 -Thr H:58
11Phe H:164 -Pro H:165
12Glu H:166 -Pro H:167
13Ser L:7 -Pro L:8
14Tyr L:91 -Asn L:92
15Tyr L:140 -Pro L:141
16Ala Q:57 -Thr Q:58
17Phe Q:164 -Pro Q:165
18Glu Q:166 -Pro Q:167
19Ser R:7 -Pro R:8
20Tyr R:91 -Asn R:92
21Tyr R:140 -Pro R:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KAQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KAQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5KAQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......eeee...eee....hhhhhhhhhhhhh........eeee..............hhhhhhhhhhhhh...eee.......ee....eeeeee..eee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeee......eeee....eeeee...............ee.......ee..ee......eee.......................eeeeee....eeeeehhhhhhhhhhhhhhhhhhhh....ee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq A  11 ATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ 501
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     ||340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500 
                                                                                                                                                                                                                                                                                                                                                     326|                                                                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                      337                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......ee....eeeeee..eee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeee......eeee....eeeee...............ee.......ee..ee......eee......................eeeeee....eeeeehhhhhhhhhhhhhhhhhhhhh...ee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kaq B  11 ATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ 501
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     ||341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501
                                                                                                                                                                                                                                                                                                                                                     326|                                                                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                      338                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:482
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......eeee...eeee...hhhhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhhhh...eee.......ee....eeeeee..eee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeee......eeee....eeeee...............ee...........ee......eee........................eeeeee....eeeeehhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq C  11 ATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIESRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQ 501
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     ||339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499  
                                                                                                                                                                                                                                                                                                                                                     326|                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                      336                                                                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.eee.....eeeeeeee........eeeeee.....eeeeeee.........hhhhh..eeeeee....eeeeee...hhhhheeeeeeeee................eeeee...eeeee.......eeeee...........eeeeeeeeee........hhhhh.................eeeeeeeeehhhhh....ee..............ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq F   2 VQLLESGGGLVQPGESLRVSCAASGFTFRDSALSWVRQAPGKGLEWVSAISGNGGATYYADTVKGRFTISRDNSQTTLYLQMNSLRADDTATYYCAKDESPPIYNLMPGYYSTYYYMDVWGKGTTVTVSSSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC 234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131|      142       152       162       172       182       192       202       212       222       232  
                                                                                                                                                           131|                                                                                                     
                                                                                                                                                            133                                                                                                     


Chain G from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee......eeeeeee.........eeee.......eeee...ee.......eeeee....eeeee.........eeee.............eeee.......eeeee..hhhhhhhheeeeeeeeeee....eeeeeee..eee.....eee.........eeeeeeeeeehhhhhh...eeeeeee.......eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq G   1 EIVMTQSPVTLSVSPGETATLSCRASQSVRSNLAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLSISSLQSDDFAVYYCQQYNHWLRTFGQGTKLEIKTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 214
                                    10        20        30        40        50        60        70        80        90       100      |111       121       131       141       151       161       171       181       191       201       211   
                                                                                                                                    107|                                                                                                         
                                                                                                                                     109                                                                                                         


Chain H from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee.....ee.eeee.........eeeeee.....eeeeeee.......ee.......eeeeee....eeeeee...hhhhheeeeeee..........................eeeee.......eeeee..........eeeeeeeeeee........hhhhh....eee...ee.....eeeeeeeeee.hhh....ee..eee....eee..ee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq H   1 EVQLLESGGGLVQPGESLRVSCAASGFTFRDSALSWVRQAPGKGLEWVSAISGNGGATYYADTVKGRFTISRDNSQTTLYLQMNSLRADDTATYYCAKDESPPIYNLMPGYYSTYYYMDVWGKGTTVTVSSSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC 234
                                    10        20        30        40        50        60        70        80        90       100       110       120       130||     141       151       161       171       181       191       201       211       221       231   
                                                                                                                                                            131|                                                                                                     
                                                                                                                                                             133                                                                                                     


Chain L from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.........eeee.......eeee...ee.......eeeeee..eeeeee.........eeee.............eeeee......eeeee..hhhhhhhheeeeeeeeeee....eeeeeee...ee...eeeee.........eeeeeeeeeehhhhhh..eeeeeeee......eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq L   1 EIVMTQSPVTLSVSPGETATLSCRASQSVRSNLAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLSISSLQSDDFAVYYCQQYNHWLRTFGQGTKLEIKTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 214
                                    10        20        30        40        50        60        70        80        90       100      |111       121       131       141       151       161       171       181       191       201       211   
                                                                                                                                    107|                                                                                                         
                                                                                                                                     109                                                                                                         


Chain Q from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...ee.....eeeeeee.........eeeeee.....eeeeeee.........hhhhh..eeeeee....eeeeee...hhhhheeeeeeeee................eeeee...eeeee.......eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh....eeeeeeehhhheeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq Q   1 EVQLLESGGGLVQPGESLRVSCAASGFTFRDSALSWVRQAPGKGLEWVSAISGNGGATYYADTVKGRFTISRDNSQTTLYLQMNSLRADDTATYYCAKDESPPIYNLMPGYYSTYYYMDVWGKGTTVTVSSSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC 234
                                    10        20        30        40        50        60        70        80        90       100       110       120       130||     141       151       161       171       181       191       201       211       221       231   
                                                                                                                                                            131|                                                                                                     
                                                                                                                                                             133                                                                                                     


Chain R from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee.......eee.............eeeee....eeeee.........eeeeee...........eeeee......eeeee..hhhhhhhheeeeeeeeeee....eeeeeee...ee...eeeee.........eeeeeeeeeehhhhhh...eeeeeee.......eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kaq R   1 EIVMTQSPVTLSVSPGETATLSCRASQSVRSNLAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLSISSLQSDDFAVYYCQQYNHWLRTFGQGTKLEIKTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 214
                                    10        20        30        40        50        60        70        80        90       100      |111       121       131       141       151       161       171       181       191       201       211   
                                                                                                                                    107|                                                                                                         
                                                                                                                                     109
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KAQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KAQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KAQ)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala F:57 - Thr F:58   [ RasMol ]  
    Ala H:57 - Thr H:58   [ RasMol ]  
    Ala Q:57 - Thr Q:58   [ RasMol ]  
    Asn A:54 - Pro A:55   [ RasMol ]  
    Asn B:54 - Pro B:55   [ RasMol ]  
    Asn C:54 - Pro C:55   [ RasMol ]  
    Glu F:166 - Pro F:167   [ RasMol ]  
    Glu H:166 - Pro H:167   [ RasMol ]  
    Glu Q:166 - Pro Q:167   [ RasMol ]  
    Phe F:164 - Pro F:165   [ RasMol ]  
    Phe H:164 - Pro H:165   [ RasMol ]  
    Phe Q:164 - Pro Q:165   [ RasMol ]  
    Ser G:7 - Pro G:8   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
    Ser R:7 - Pro R:8   [ RasMol ]  
    Tyr G:140 - Pro G:141   [ RasMol ]  
    Tyr G:91 - Asn G:92   [ RasMol ]  
    Tyr L:140 - Pro L:141   [ RasMol ]  
    Tyr L:91 - Asn L:92   [ RasMol ]  
    Tyr R:140 - Pro R:141   [ RasMol ]  
    Tyr R:91 - Asn R:92   [ RasMol ]  
 

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