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(-) Description

Title :  STRUCTURE OF THE HAEMOPHILUS INFLUENZAE LPXH-LIPID X COMPLEX
 
Authors :  J. Cho, C. -J. Lee, P. Zhou
Date :  30 May 16  (Deposition) - 10 Aug 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Lpxh, Lipid X, Udp-Diacylglucosamine, Lipid A, Lps, Lipopolysaccharide, Antibiotic, Calcineurin-Like Phosphoesterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Cho, C. J. Lee, J. Zhao, H. E. Young, P. Zhou
Structure Of The Essential Haemophilus Influenzae Udp-Diacylglucosamine Pyrophosphohydrolase Lpxh In Lipid A Biosynthesis.
Nat Microbiol V. 1 16154 2016
PubMed-ID: 27780190  |  Reference-DOI: 10.1038/NMICROBIOL.2016.154

(-) Compounds

Molecule 1 - UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE
    Chains: A
    EC Number: 3.6.1.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LPXH, HI_0735
    Organism Scientific: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM 11121 / KW20 / RD)
    Organism Taxid: 71421
    Strain: ATCC 51907 / DSM 11121 / KW20 / RD
    Synonym: UDP-2,3-DIACYLGLUCOSAMINE DIPHOSPHATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 11)

Asymmetric/Biological Unit (5, 11)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3LP51Ligand/Ion(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE
4MN2Ligand/IonMANGANESE (II) ION
5MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5K8K)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee........hhhhhhhhhhhhhhhhhhh.eeeee.............hhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.eee..eeeeee..eeeeee.hhhhh...hhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..eeee......eeee....eeee...........eeee....eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k8k A   1 mKHSYFISDLHLSETQPELTALFVDFmQNLAPQAERLYILGDLFDFWIGDDEQSALIQQVKDLIKFVSDQGVQCYFQHGNRDFLIGERFSKETGAQLLPDYQLITLYDKKILLCHGDTLCIDDEAYQQFRRRVHQKWLQRLFLCLPLKVRVIIAEKIRAKSNQDKQAKSQEImDVNQAFTAEKVQEFGVNLLIHGHTHREAIHQQEEFTRIVLGDWRKNYASILKmDESGEFGFIKD 237
                            |       10        20      | 30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  |    180       190       200       210       220     | 230       
                            |                        27-MSE                                                                                                                                           173-MSE                                              226-MSE       
                            1-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (6, 6)

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