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(-) Description

Title :  STRUCTURE OF PNOB8 PARA
 
Authors :  M. Schumacher
Date :  24 May 16  (Deposition) - 22 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.37
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Partition, Segregation, Pnob8, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, N. K. Tonthat, J. Lee, F. A. Rodriguez-Castaneda, N. B. Chinnam, A. K. Kalliomaa-Sanford, I. W. Ng, M. T. Barge, P. L. Shaw D. Barilla
Structures Of Archaeal Dna Segregation Machinery Reveal Bacterial And Eukaryotic Linkages.
Science V. 349 1120 2015
PubMed-ID: 26339031  |  Reference-DOI: 10.1126/SCIENCE.AAA9046

(-) Compounds

Molecule 1 - PARA
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SULFOLOBUS SP. NOB8H2
    Organism Taxid: 84600

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ANP-1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , GLY A:14 , VAL A:15 , GLY A:16 , LYS A:17 , THR A:18 , THR A:19 , ASP A:41 , GLN A:43 , ARG A:207 , LEU A:254 , SER A:255 , SER A:256 , ARG A:257 , LYS A:258 , LEU A:261 , SER A:262 , MG A:702 , HOH A:823 , HOH A:825 , HOH A:852 , LYS D:12 , GLY D:13 , THR D:167 , GLU D:169 , HOH D:810binding site for residue ANP A 701
2AC2SOFTWARETHR A:18 , ASP A:41 , ASP A:141 , THR A:142 , ANP A:701binding site for residue MG A 702
3AC3SOFTWAREGLY A:13 , THR A:167 , GLU A:169 , HOH A:845 , GLY D:13 , GLY D:14 , VAL D:15 , GLY D:16 , LYS D:17 , THR D:18 , THR D:19 , ASP D:41 , GLN D:43 , ARG D:207 , LEU D:254 , SER D:255 , SER D:256 , ARG D:257 , LYS D:258 , LEU D:261 , SER D:262 , MG D:702 , HOH D:815 , HOH D:834 , HOH D:858binding site for residue ANP D 701
4AC4SOFTWARETHR D:18 , ASP D:41 , ASP D:141 , ANP D:701 , HOH D:815binding site for residue MG D 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K5Z)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Tyr A:197 -Pro A:198
2Tyr A:238 -Pro A:239
3Tyr B:197 -Pro B:198
4Tyr B:238 -Pro B:239
5Tyr C:197 -Pro C:198
6Tyr C:238 -Pro C:239
7Tyr D:197 -Pro D:198
8Tyr D:238 -Pro D:239

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K5Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K5Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5K5Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.....eeeeeee..eeeeeeee..hhhhhhhhhh.........hhhhhhhhhh.....eeeee.......hhhhhhhh..eeeeee..hhhhhhhhhhhhhhhhhhhh............eeeeeee....hhhhhhhhhhhhhhhhh..................hhhhh....hhhhhh.........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k5z A   2 IAKVITIHNFKGGVGKTTTTAIIAMGLGAMGKRVLLIDFDAQMSLTQIFVREEDRLKILESSHVTQDKSAFALLRTMEPARIKFFHEGKGVKFGIDVIPGSYMSIFKLMFEGYIPIQSEWNILRMLDLYRDQYDYILIDTAPSDTVTIKPILRASHYLLIPEDGTPEAFTAMRIFLNEALPKYILPRPEGGFYKYPRILGVILTRVSTAILMKHNKILEEELSNSELKDHVIYPPYFGADKDNPEDYILSSRKEYLSDLIWRDEKRAPISEVFDKLFLVDDKVQKDLYAFFSKVFTEIPKEVVRRVENDQ 315
                                    11        21        31        41        51        61  ||    72        82        92       102       112       122       132       142       152       162       172       182       192       202     ||215       225       235       245       255       265       275       285       295       305       315
                                                                                         64|                                                                                                                                           208|                                                                                                       
                                                                                          66                                                                                                                                            212                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhhh....hhhhhh.......eeeeeee..eeeeeeee..hhhhhhhhhhh........hhhhhhhhhhh....eeeeee...hhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhhhhhh............eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh............hhhhh...................hhhhhhhhhhh........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k5z B   2 IAKVITIHNFKGGVGKTTTTAIIAMGLGAMGKRVLLIDFDAQMSLTQIFVREEDRLKILESSHQDKSAFALLRTMEPARIKFFHEGKGVKFGIDVIPGSYMSIFKLMFEGYIPIQSEWNILRMLDLYRDQYDYILIDTAPSDTVTIKPILRASHYLLIPEDGTPEAFTAMRIFLNEALPKYILPRPEGGFYKYPRILGVILTRVRSTAILMKHNKILEEELSNSELKDHVIYPPYFGADKDNPEDYILSSRKEYLSDLIWRDEKRAPISEVFDKLFKDLYAFFSKVFTEIPKEVVRRVENDQ 315
                                    11        21        31        41        51        61  ||    74        84        94       104       114       124       134       144       154       164       174       184       194       204    || 216       226       236       246       256       266       276     ||293       303       313  
                                                                                         64|                                                                                                                                          209|                                                                   282|                         
                                                                                          68                                                                                                                                           212                                                                    290                         


Chain C from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh..hhhhhhh..........hhhhhh.......eeeeeee..eeeeeeee..hhhhhhhhhhh........hhhhhhhh.......eeeeee......hhhhhhhh..eeeeee..hhhhhhhhhhhhhhhhhhh.............eeeeeee.....hhhhhhhhhhhhhhhhhh...................hhhhhh.............hhhhhhhhhh.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k5z C   2 IAKVITIHNFKGGVGKTTTTAIIAMGLGAMGKRVLLIDFDAQMSLTQIFVREEDRLKILESSHDVTQDKSAFALLRTMEPARIKFFHEGKGVKFGIDVIPGSYMSIFKLMFEGYIPIQSEWNILRMLDLYRDQYDYILIDTAPSDTVTIKPILRASHYLLIPEDGTPEAFTAMRIFLNEALPKYILPRPEGGFYKYPRILGVILTRVRRNSTAILMKHNKILEEELSNSELKDHVIYPPYFGADKDNPEDYILSSRDLIWRDEKRAPISEVFDKLFTEIPKEVVRRVENDQ 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251     ||266       276    || 304       314 
                                                                                                                                                                                                                                                                                         257|               281|               
                                                                                                                                                                                                                                                                                          263                300               


Chain D from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.......eeeeeee..eeeeeeee..hhhhhhhhhh.........hhhhhhhhhh.....eeeeee......hhhhhhhh..eeeeee..hhhhhhhhhhhhhhhhhhhh............eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh...hhhhhh.........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k5z D   2 IAKVITIHNFKGGVGKTTTTAIIAMGLGAMGKRVLLIDFDAQMSLTQIFVREEDRLKILESSHDVTQDKSAFALLRTMEPARIKFFHEGKGVKFGIDVIPGSYMSIFKLMFEGYIPIQSEWNILRMLDLYRDQYDYILIDTAPSDTVTIKPILRASHYLLIPEDGTPEAFTAMRIFLNEALPKYILPRPEGGFYKYPRILGVILTRVRRNSTAILMKHNKILEEELSNSELKDHVIYPPYFGADKDNPEDYILSSRKEYLSDLIWRDEKRAPISEVFDKLFLVDDKVQKDLYAFFSKVFTEIPKEVVRRVENDQ 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K5Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K5Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K5Z)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5K5Z)

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