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(-) Description

Title :  ASPA-32MER DNA,CRYSTAL FORM 2
 
Authors :  M. Schumacher
Date :  23 May 16  (Deposition) - 15 Jun 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.09
Chains :  Asym. Unit :  A,B,C,D,E,F,N,P
Biol. Unit 1:  A,B,C,D,N,P  (1x)
Biol. Unit 2:  E,F  (1x)
Keywords :  Aspa, Centromere, Dna, Partition, Archaea, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, N. K. Tonthat, J. Lee, F. A. Rodriguez-Castaneda, N. B. Chinnam, A. K. Kalliomaa-Sanford, I. W. Ng, M. T. Barge, P. L. Shaw D. Barilla
Structures Of Archaeal Dna Segregation Machinery Reveal Bacterial And Eukaryotic Linkages.
Science V. 349 1120 2015
PubMed-ID: 26339031  |  Reference-DOI: 10.1126/SCIENCE.AAA9046

(-) Compounds

Molecule 1 - ASPA
    Chains: C, D, A, B, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SULFOLOBUS SP. NOB8H2
    Organism Taxid: 84600
 
Molecule 2 - DNA (32-MER)
    Chains: P
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA (32-MER)
    Chains: N
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFNP
Biological Unit 1 (1x): ABCD  NP
Biological Unit 2 (1x):     EF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1PO49Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1PO43Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS D:8 , TYR D:17binding site for residue PO4 D 101
2AC2SOFTWARETHR A:79 , GLU D:35 , GLN D:38binding site for residue PO4 A 101
3AC3SOFTWARELYS A:8 , THR A:37binding site for residue PO4 A 102
4AC4SOFTWAREGLU B:65 , TYR B:67 , LYS E:59 , GLN E:61binding site for residue PO4 E 101
5AC5SOFTWAREGLY A:55 , LEU E:52 , ALA E:53binding site for residue PO4 E 102
6AC6SOFTWAREASP E:7 , PO4 F:103binding site for residue PO4 E 103
7AC7SOFTWAREVAL D:58 , LEU F:52 , GLY F:55 , VAL F:57 , VAL F:58binding site for residue PO4 F 101
8AC8SOFTWARELYS E:8 , TYR E:17 , THR E:37 , PO4 E:103 , LYS F:84binding site for residue PO4 F 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K5R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K5R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K5R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K5R)

(-) Exons   (0, 0)

(no "Exon" information available for 5K5R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhh...hhhhhhhh...hhhhhhhhhhhhhhh..eeeee....eeeeehhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  5k5r A  5 STDKYIFLTPRAYIIVHLLKVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLATAELEKIRKLVEVVQ 93
                                    14        24        34        44        54        64        74        84         


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  5k5r B  2 GKISTDKYIFLTPRAYIIVHLLKVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLATAELEKIRKLVEVVQ 93
                                    11        21        31        41        51        61        71        81        91  


Chain C from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh.eeehhhhhhh...hhhhhhhhhhhhhhh..eeeee....eeeeehhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  5k5r C  2 GKISTDKYIFLTPRAYIIVHLLKVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLATAELEKIRKLVEVV 92
                                    11        21        31        41        51        61        71        81        91 


Chain D from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhheeehhhhhhhhh.hhhhhhhhhhhhhhhh.eeee......eeeehhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  5k5r D  2 GKISTDKYIFLTPRAYIIVHLLKVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLATAELEKIRKLVEV 91
                                    11        21        31        41        51        61        71        81        91


Chain E from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhh...eee........eeehhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  5k5r E  2 GKISTDKYIFLTPRAYIIVHLLKVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLATAELEKIRKLVEVV 92
                                    11        21        31        41        51        61        71        81        91 


Chain F from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhh.....eehhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee....eeeeehhhhhhhhh.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  5k5r F  2 GKISTDKYIFLTPRAYIIVHLLKVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLATAELEKIRKLVEVVQ 93
                                    11        21        31        41        51        61        71        81        91  


Chain N from PDB  Type:DNA  Length:32
                                                               
                  5k5r N 13 TATTATGCTCTATGATTAACATAGAGCAAACA 44
                                    22        32        42  


Chain P from PDB  Type:DNA  Length:32
                                                               
                  5k5r P  7 TGTTTGCTCTATGTTAATCGCAGAGCATAATA 38
                                    16        26        36
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K5R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K5R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K5R)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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