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(-) Description

Title :  RHESUS MACAQUES TRIM5ALPHA BBOX2 DOMAIN
 
Authors :  J. K. Keown, D. C. Goldstone
Date :  19 May 16  (Deposition) - 20 Jul 16  (Release) - 24 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Zinc Finger Bbox2 Antiretroviral, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Keown, D. C. Goldstone
Crystal Structure Of The Trim5 Alpha Bbox2 Domain From Rhesus Macaques Describes A Plastic Oligomerisation Interface.
J. Struct. Biol. V. 195 282 2016
PubMed-ID: 27402535  |  Reference-DOI: 10.1016/J.JSB.2016.07.004

(-) Compounds

Molecule 1 - TRIPARTITE MOTIF-CONTAINING PROTEIN 5,TRIPARTITE MOTIF- CONTAINING PROTEIN 5
    Chains: A, B, C, D
    EC Number: 6.3.2.-, 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TRIM5
    Organism Common: RHESUS MACAQUE
    Organism Scientific: MACACA MULATTA
    Organism Taxid: 9544
    Synonym: TRIM5ALPHA,TRIM5ALPHA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1NO31Ligand/IonNITRATE ION
2ZN8Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1NO31Ligand/IonNITRATE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1NO3-1Ligand/IonNITRATE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:97 , HIS A:100 , CYS A:116 , CYS A:119binding site for residue ZN A 201
2AC2SOFTWARECYS A:108 , ASP A:111 , HIS A:125 , HIS A:128binding site for residue ZN A 202
3AC3SOFTWARECYS B:97 , HIS B:100 , CYS B:116 , CYS B:119binding site for residue ZN B 201
4AC4SOFTWARECYS B:108 , ASP B:111 , HIS B:125 , HIS B:128binding site for residue ZN B 202
5AC5SOFTWAREALA A:98 , LYS B:113 , ILE B:115 , CYS B:119 , GLU B:124 , HIS B:125binding site for residue NO3 B 203
6AC6SOFTWARECYS C:108 , ASP C:111 , HIS C:125 , HIS C:128binding site for residue ZN C 201
7AC7SOFTWARECYS C:97 , HIS C:100 , CYS C:116 , CYS C:119binding site for residue ZN C 202
8AC8SOFTWARECYS D:108 , ASP D:111 , HIS D:125 , HIS D:128binding site for residue ZN D 201
9AC9SOFTWARECYS D:97 , HIS D:100 , CYS D:116 , CYS D:119binding site for residue ZN D 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K3Q)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K3Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K3Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K3Q)

(-) Exons   (0, 0)

(no "Exon" information available for 5K3Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:43
                                                                           
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author ............eee....eeehhhhhhhhhhh...eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 5k3q A  94 VDHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLMEEV 136
                                   103       113       123       133   


Chain B from PDB  Type:PROTEIN  Length:43
                                                                           
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .............eee....eeehhhhhhhhhhh...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 5k3q B  93 GVDHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLMEE 135
                                   102       112       122       132   


Chain C from PDB  Type:PROTEIN  Length:42
                                                                          
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author ............eee....eeehhhhhhhhhhh...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                 5k3q C  94 VDHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLMEE 135
                                   103       113       123       133  


Chain D from PDB  Type:PROTEIN  Length:41
                                                                         
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ............eee....eeehhhhhhhhhhh...eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 5k3q D  94 VDHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLME 134
                                   103       113       123       133
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K3Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K3Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K3Q)

(-) Gene Ontology  (34, 34)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRIM5_MACMU | Q0PF16: 2lm3 3uv9 4b3n 4tkp 5eiu 5f7t 5iea

(-) Related Entries Specified in the PDB File

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