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(-) Description

Title :  CRYSTAL STRUCTURE OF M. TUBERCULOSIS USPC (MONOCLINIC CRYSTAL FORM)
 
Authors :  K. Futterer, E. Fullam, G. S. Besra
Date :  19 May 16  (Deposition) - 01 Jun 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Mycobacterium Tuberculosis, Abc Transporter, Solute Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Fullam, I. Prokes, K. Futterer, G. S. Besra
Structural And Functional Analysis Of The Solute-Binding Protein Uspc From Mycobacterium Tuberculosis That Is Specific For Amino Sugars.
Open Biology V. 6 2016
PubMed-ID: 27335320  |  Reference-DOI: 10.1098/RSOB.160105

(-) Compounds

Molecule 1 - PROBABLE PERIPLASMIC SUGAR-BINDING LIPOPROTEIN USPC
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET23B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: USPC, RV2318
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Other Details: N-TERMINALLY TRUNCATED USPC FROM MYCOBACTERIUM TUBERCULOSIS WITH C-TERMINAL HEXA-HISTIDINE TAG FROM PET23B PLASMID

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5K2Y)

(-) Sites  (0, 0)

(no "Site" information available for 5K2Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K2Y)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro B:66 -Asp B:67

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K2Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K2Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5K2Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh.....eeee...hhhhhhhh.............hhhhhhhhee..ee..eeeee....eeeeehhhhhhh..hhhhhh..........hhhhhhhhh.ee...........hhh.eee...........hhhhhhhhh....ee..ee...hhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhh....eeeehhhhhhhhhhhh...eeeee.........eee.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhh...hhhhhhhhhh.eee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k2y A  39 IVVTVRLWDEPIAAAYRQSFAAFTRSHPDIEVRTNLVAYSTYFETLRTDVAGGSADDIFWLSNAYFAAYADSGRLMKIQTDAADWEPAVVDQFTRSGVLWGVPQLTDAGIAVFYNADLLAAAGVDPTQVDNLRWSRGDDDTLRPMLARLTVDADGRTANTPGFDARRVRQWGYNAANDPQAIYLNYIGSAGGVFQRDGKFAFDNPGAIEAFRYLVGLINDDHVAPPASDTNDNGDFSRNQFLAGKMALFQSGTYSLAPVARDALFHWGVAMLPAGPAGRVSVTNGIAAAGNSASKHPDAVRQVLAWMGSTEGNSYLGRHGAAIPAVLSAQPVYFDYWSARGVDVTPFFAVLNGPRIAAPGGAGFAAGQQALEPYFDEMFLGRGDVTTTLRQAQAAANAAT 438
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438


Chain B from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh.....eeee...hhhhhhhh........hhhhhhhhhhhhhee..ee..eeeee....eeeeehhhhhhh..hhhhhhhh........hhhhhhhhh.ee...........hhh.eee...........hhhhhhhhh....ee..ee...hhhhhhhhhhhhhhhhh.....hhhhh....hhhhhhhhh....eeeehhhhhhhhhhhh...eeee..........eee.eeeeee.....hhhhhhhhhhhhhhhhhhhh.......ee.hhhhhhhhhhhhhhh....hhhhhhhhh.eee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k2y B  39 IVVTVRLWDEPIAAAYRQSFAAFTRSHPDIEVRTNLVAYSTYFETLRTDVAGGSADDIFWLSNAYFAAYADSGRLMKIQTDAADWEPAVVDQFTRSGVLWGVPQLTDAGIAVFYNADLLAAAGVDPTQVDNLRWSRGDDDTLRPMLARLTVDADGRTANTPGFDARRVRQWGYNAANDPQAIYLNYIGSAGGVFQRDGKFAFDNPGAIEAFRYLVGLINDDHVAPPASDTNDNGDFSRNQFLAGKMALFQSGTYSLAPVARDALFHWGVAMLPAGPAGRVSVTNGIAAAGNSASKHPDAVRQVLAWMGSTEGNSYLGRHGAAIPAVLSAQPVYFDYWSARGVDVTPFFAVLNGPRIAAPGGAGFAAGQQALEPYFDEMFLGRGDVTTTLRQAQAAANAAT 438
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K2Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K2Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K2Y)

(-) Gene Ontology  (2, 2)

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  Cis Peptide Bonds
    Pro B:66 - Asp B:67   [ RasMol ]  
 
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 Related Entries

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UniProtKB/TrEMBL
        P71894_MYCTU | P71894: 5k2x

(-) Related Entries Specified in the PDB File

5k2x CRYSTAL STRUCTURE OF M. TUBERCULOSIS USPC (TETRAGONAL CRYSTAL FORM)