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(-) Description

Title :  CRYSTAL STRUCTURE OF OXIDIZED SHEWANELLA YELLOW ENZYME 4 (SYE4) IN COMPLEX WITH P-METHOXYPHENOL
 
Authors :  J. Elegheert, A. Brige, S. N. Savvides
Date :  18 May 16  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Cofactor-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Elegheert, S. N. Savvides
Structural Basis For The Substrate Promiscuity Of The Old Yellow Enzyme Homologue Sye4 From Shewanella Oneidensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1
    Chains: A
    EC Number: 1.5.1.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PACYC-DUET
    Expression System Taxid: 469008
    Gene: SYE4, SO_3392
    Organism Scientific: SHEWANELLA ONEIDENSIS (STRAIN MR-1)
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
14KS6Ligand/Ion4-METHOXYPHENOL
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:32 , PRO A:33 , LEU A:34 , THR A:35 , ALA A:66 , GLN A:108 , HIS A:182 , ASN A:185 , ARG A:234 , ILE A:272 , PHE A:273 , VAL A:301 , SER A:303 , GLY A:324 , ARG A:325 , 4KS A:401 , 4KS A:403 , HOH A:614 , HOH A:630 , HOH A:642binding site for residue FMN A 400
2AC2SOFTWARETHR A:35 , CYS A:37 , TYR A:76 , PRO A:77 , VAL A:138 , PRO A:139 , ARG A:140 , 4KS A:406binding site for residue 4KS A 402
3AC3SOFTWAREASP A:40 , ALA A:41 , ASN A:42 , PHE A:241 , PHE A:273 , TYR A:346 , ASP A:348 , FMN A:400 , 4KS A:401 , 4KS A:406 , HOH A:698binding site for residue 4KS A 403
4AC4SOFTWAREGLU A:58 , ILE A:172 , PHE A:176 , ILE A:226 , ARG A:230 , ARG A:338 , HOH A:651binding site for residue 4KS A 404
5AC5SOFTWAREARG A:70 , PRO A:71 , PHE A:83 , THR A:84 , THR A:201 , HOH A:518 , HOH A:883binding site for residue 4KS A 405
6AC6SOFTWARETHR A:35 , TYR A:76 , HIS A:182 , ASN A:185 , TYR A:187 , PHE A:241 , PHE A:273 , FMN A:400 , 4KS A:402 , 4KS A:403binding site for residues 4KS A 401 and 4KS A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K1M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K1M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K1M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K1M)

(-) Exons   (0, 0)

(no "Exon" information available for 5K1M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh.ee.....ee...eee..............hhhhhhhhhh.....eeeeeeee.hhhhh.........hhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....ee.....................ee.hhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhh...eeee.......eehhhheehhhhhhhhh...eee....hhhhhhhhhhh....eeeehhhhhhh.hhhhhhhh.......hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k1m A   8 NSVENLFDTYKLNDTITLKNRILMAPLTRCMADANLVPTDDMVAYYARRAEAGLIISEATIIRPDAQGYPNTPGIFTQAQIAGWRKVTDAVHANGGKIFVQLWHTGRVAHPHFFGGGDVLAPSAQKIEGSVPRMRELTYVTPKAVTVEDIQGLVRDYAKAAENVIEAGFDGVEIHGANGYLIDQFLHHDSNRRTDEYGGTPVNMSRFALEVVDAIIARIGHDRTGLRISPGAYFNMASDSRDRVVFDYLLPELEKRDLAFVHIGIFDDSIEFDYLGGTASSYVRAHYGKTLVGVGSYSAETASKAIAEDKFDLIAIGRPFIANPDYVAKVRNSEELVAYSDEMLASLI 355
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K1M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K1M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K1M)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q8EBV3_SHEON | Q8EBV3: 5k0r 5k1k 5k1q 5k1u 5k1w
UniProtKB/TrEMBL
        Q8EBV3_SHEON | Q8EBV3: 4b5n

(-) Related Entries Specified in the PDB File

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