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(-) Description

Title :  CRYSTAL STRUCTURE OF A CLASS C BETA LACTAMASE/COMPOUND2 COMPLEX
 
Authors :  Y. J. An, J. H. Na, S. S. Cha
Date :  18 May 16  (Deposition) - 17 May 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A
Keywords :  Class C Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Na, Y. J. An, S. S. Cha
Gmp And Imp Are Competitive Inhibitors Of Cmy-10, An Extended-Spectrum Class C Beta-Lactamase.
Antimicrob. Agents V. 61 2017 Chemother.
PubMed-ID: 28242658  |  Reference-DOI: 10.1128/AAC.00098-17

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BLACMY-10
    Organism Scientific: ENTEROBACTER AEROGENES
    Organism Taxid: 548

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CD5Ligand/IonCADMIUM ION
2IMP1Ligand/IonINOSINIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:65 , LEU A:120 , GLN A:121 , TYR A:151 , ILE A:292 , LYS A:312 , THR A:313 , GLY A:314 , SER A:315 , ASN A:340 , ILE A:343 , HOH A:517 , HOH A:565binding site for residue IMP A 401
2AC2SOFTWAREHIS A:161 , HOH A:569 , HOH A:570 , HOH A:571binding site for residue CD A 402
3AC3SOFTWAREASP A:244 , HIS A:259 , HOH A:535 , HOH A:572 , HOH A:579 , HOH A:581binding site for residue CD A 403
4AC4SOFTWAREHIS A:24 , HOH A:577 , HOH A:580binding site for residue CD A 404
5AC5SOFTWAREHIS A:0 , GLU A:50 , HIS A:148 , HOH A:560 , HOH A:576binding site for residue CD A 405
6AC6SOFTWAREGLU A:207 , VAL A:278 , HIS A:351 , HOH A:575 , HOH A:582binding site for residue CD A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K1F)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:276 -Pro A:277

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K1F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K1F)

(-) Exons   (0, 0)

(no "Exon" information available for 5K1F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhh.....hhhhhhhhhhhhh..eee..eee....eeee...hhhhhhhhhhhhhhhh.ee........eeeeeeee....eeeeeeehhhheeeeeee....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k1f A  -1 HHGEASPVDPLRPVVDASIQPLLKEHRIPGMAVAVLKDGKAHYFNYGVANRESGAGVSEQTLFEIGSVSKTLTATLGAYAVVKGAMQLDDKASRHAPWLKGSAFDSITMGELATYSAGGLPLQFPEEVDSSEKMRAYYRQWAPVYSPGSHRQYSNPSIGLFGHLAASSLKQPFAPLMEQTLLPGLGMHHTYVNVPKQAMASYAYGYSKEDKPIRVNPGMLADEAYGIKTSSADLLRFVKANIGGVDDKALQQAISLTHQGHYSVGGMTQGLGWESYAYPVTEQTLLAGNSAKVILEANPTAAPRESQVLFNKTGSTNGFGAYVAFVPARGIGIVMLANRNYPIEARIKAAHAILAQLA 358
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298     ||310       320       330       340       350        
                                                                                                                                                                                                                                                                                                                                           304|                                                   
                                                                                                                                                                                                                                                                                                                                            307
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K1F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K1F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K1F)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:276 - Pro A:277   [ RasMol ]  
 

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UniProtKB/Swiss-Prot
        Q99QC1_ENTAE | Q99QC1: 5k1d
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(-) Related Entries Specified in the PDB File

5k1d