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(-) Description

Title :  THE STRUCTURE OF D77G HCINAP-ADP
 
Authors :  Y. Liu, Z. Yang, Y. Yang, X. Cai, X. Zheng
Date :  17 May 16  (Deposition) - 10 Aug 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Atpase, Adenylate Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bai, J. Zhang, T. Li, R. Hang, Y. Liu, Y. Tian, D. Huang, L. Qu, X. Cao
The Atpase Hcinap Regulates 18S Rrna Processing And Is Essential For Embryogenesis And Tumor Growth
Nat Commun 2016
PubMed: search  |  Reference-DOI: 10.1038/NCOMMS12310

(-) Compounds

Molecule 1 - ADENYLATE KINASE ISOENZYME 6
    Chains: A
    EC Number: 2.7.4.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AK6, CINAP, AD-004, CGI-137
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AK6,ADRENAL GLAND PROTEIN AD-004,COILIN-INTERACTING NUCLEAR ATPASE PROTEIN,HCINAP,DUAL ACTIVITY ADENYLATE KINASE/ATPASE, AK/ATPASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , THR A:18 , ARG A:105 , ARG A:109 , LYS A:148 , PRO A:149 , LEU A:152 , HOH A:302 , HOH A:310 , HOH A:322 , HOH A:338 , HOH A:374 , HOH A:375 , HOH A:415binding site for residue ADP A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JZV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JZV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JZV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JZV)

(-) Exons   (0, 0)

(no "Exon" information available for 5JZV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.....hhhhhhhhhhhhhh.eeeehhhhhhhhh.eeeee....eeeehhhhhhhhhhhhhhhh.eeee.......hhhhh.eeeeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jzv A  -2 RGSMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVGYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 172
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JZV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JZV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JZV)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  5jzv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAD6_HUMAN | Q9Y3D8: 1rkb 3iij 3iik 3iil 3iim

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JZV)