Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF MTISWI
 
Authors :  Z. Chen, L. Yan
Date :  13 May 16  (Deposition) - 07 Dec 16  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Chromatin Remodeler, Iswi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Yan, L. Wang, Y. Tian, X. Xia, Z. Chen
Structure And Regulation Of The Chromatin Remodeller Iswi
Nature V. 540 466 2016
PubMed-ID: 27919072  |  Reference-DOI: 10.1038/NATURE20590

(-) Compounds

Molecule 1 - CHROMATIN-REMODELING COMPLEX ATPASE-LIKE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 81-803
    Gene: MYCTH_2307364
    Organism Scientific: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / BCRC 31852 / DSM 1799)
    Organism Taxid: 573729
    Strain: ATCC 42464 / BCRC 31852 / DSM 1799

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:214 , GLY A:216 , LYS A:217binding site for residue CL A 1000
2AC2SOFTWAREGLY B:214 , GLY B:216 , LYS B:217binding site for residue CL B 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JXR)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:236 -Pro A:237
2Pro A:477 -Pro A:478
3Gly B:236 -Pro B:237
4Pro B:477 -Pro B:478

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JXR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JXR)

(-) Exons   (0, 0)

(no "Exon" information available for 5JXR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:625
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhh.......eeeeehhhhhhhhhhhh...eeeeeee...hhhhhhh..eeeeeee.......hhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhh..ee..hhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhh......eeeee.hhhhh........eeee.....hhhhhhhhhh...........eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jxr A  87 SKEDDTLRRFRYLLGLTDLFRHFIETNPNPKIREIMKEIDRQNEEEARQRKRGGRQGGATSERRRRTEAEEDAELLKDEKDGGSAETVFRESPPFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTIAFLGYLRHIMGITGPHLVTVPKSTLDNWKREFEKWTPEVNVLVLQGAKEERHQLINDRLVDENFDVCITSYEMILREKAHLKKFAWEYIIIDEASLAQVIRMFNSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSEAFDQWFSGQDRDQDTVVQQLHRVLRPFLLRRVKSDVEKSLLPKKEINVYIGMSEMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLIYNAGKMVVLDKLLKRIQKQGSRVLIFSQMSRLLDILEDYCVFRGYKYCRIDGSTAHEDRIAAIDEYNKPGSDKFIFLLTTRAGGLGINLTTADIVILYDSDWNPQADLQAMDRAHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGRAQVAAKAAANKDELLSMIQHGAEKVFQTKGAFGTMAEKGSQLDDDDIDAILQAGETRTKELNARYEKLGIDDLQKF 719
                                    96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316|      334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714     
                                                                                                                                                                                                                                                               316|                                                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                325                                                                                                                                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:625
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhh.......eeeeehhhhhhhhhhhh..eeeeeeee...hhhhhhh.eeeeeeee.......hhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhh..ee..hhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhh......eeeee.hhhhh........eeee.....hhhhhhhhhh...........eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jxr B  87 SKEDDTLRRFRYLLGLTDLFRHFIETNPNPKIREIMKEIDRQNEEEARQRKRGGRQGGATSERRRRTEAEEDAELLKDEKDGGSAETVFRESPPFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTIAFLGYLRHIMGITGPHLVTVPKSTLDNWKREFEKWTPEVNVLVLQGAKEERHQLINDRLVDENFDVCITSYEMILREKAHLKKFAWEYIIIDEASLAQVIRMFNSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSEAFDQWFSGQDRDQDTVVQQLHRVLRPFLLRRVKSDVEKSLLPKKEINVYIGMSEMQVKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLIYNAGKMVVLDKLLKRIQKQGSRVLIFSQMSRLLDILEDYCVFRGYKYCRIDGSTAHEDRIAAIDEYNKPGSDKFIFLLTTRAGGLGINLTTADIVILYDSDWNPQADLQAMDRAHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGRAQVAAKAAANKDELLSMIQHGAEKVFQTKGAFGTMAEKGSQLDDDDIDAILQAGETRTKELNARYEKLGIDDLQKF 719
                                    96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316|      334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714     
                                                                                                                                                                                                                                                               316|                                                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                325
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JXR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JXR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JXR)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly A:236 - Pro A:237   [ RasMol ]  
    Gly B:236 - Pro B:237   [ RasMol ]  
    Pro A:477 - Pro A:478   [ RasMol ]  
    Pro B:477 - Pro B:478   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5jxr
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  G2QFM3_MYCTT | G2QFM3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  G2QFM3_MYCTT | G2QFM3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G2QFM3_MYCTT | G2QFM3: 5jxt

(-) Related Entries Specified in the PDB File

5jxt