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(-) Description

Title :  JOINT X-RAY/NEUTRON STRUCTURE OF MTAN COMPLEX WITH FORMYCIN A
 
Authors :  M. T. Banco, A. Y. Kovalevsky, D. R. Ronning
Date :  03 May 16  (Deposition) - 16 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  NEUTRON DIFFRACTION; X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Neutron, Nucleosidase, Joint Neutron And X-Ray, Helicobacter Pylori, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. T. Banco, V. Mishra, A. Ostermann, T. E. Schrader, G. B. Evans, A. Kovalevsky, D. R. Ronning
Neutron Structures Of The Helicobacter Pylori 5'-Methylthioadenosine Nucleosidase Highlight Proton Sharin And Protonation States.
Proc. Natl. Acad. Sci. V. 113 13756 2016 U. S. A.
PubMed-ID: 27856757  |  Reference-DOI: 10.1073/PNAS.1609718113

(-) Compounds

Molecule 1 - AMINODEOXYFUTALOSINE NUCLEOSIDASE
    Chains: A
    EC Number: 3.2.2.30, 3.2.2.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MTNN, MTN, JHP_0082
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: AMINOFUTALOSINE NUCLEOSIDASE, 5'-METHYLTHIOADENOSINE/S- ADENOSYLHOMOCYSTEINE NUCLEOSIDASE, MTAN, 6-AMINO-6-DEOXYFUTALOSINE N- RIBOSYLHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 54)

Asymmetric Unit (2, 54)
No.NameCountTypeFull Name
1DOD53Ligand/Ion
2FMC1Ligand/Ion(1S)-1-(7-AMINO-1H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-1,4-ANHYDRO-D-RIBITOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1DOD-1Ligand/Ion
2FMC2Ligand/Ion(1S)-1-(7-AMINO-1H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-1,4-ANHYDRO-D-RIBITOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:9 , GLY A:80 , GLN A:152 , PHE A:153 , VAL A:154 , VAL A:172 , GLU A:173 , MET A:174 , GLU A:175 , ASP A:198 , PHE A:208binding site for residue FMC A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JPC)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5JPC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhh...eeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeee....hhhhh............ee.hhhhhhhhhhhhhhh...eeeeeeee......hhhhhhhhhhhhh..eee.hhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jpc A   2 QKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL 230
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JPC)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JPC)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MQMTN_HELPJ | Q9ZMY2: 3nm4 3nm5 3nm6 4ffs 4ojt 4oy3 4p54 4wkn 4wko 4wkp 4ynb 4yo8 5ccd 5cce 5k1z 5kb3

(-) Related Entries Specified in the PDB File

5k1z