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(-) Description

Title :  CRYSTAL STRUCTURE OF S. POMBE DCP1 IN COMPLEX WITH THE DECAPPING ENHANCER EDC
 
Authors :  J. P. Wurm, R. Sprangers
Date :  03 May 16  (Deposition) - 01 Jun 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Evh1, Complex, Mrna, Decapping, Hydrolase, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Wurm, J. Overbeck, R. Sprangers
Structure Of The Spedc/Dcp1 Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MRNA-DECAPPING ENZYME SUBUNIT 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: DCP1, SPBC3B9.21
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 2 - UNCHARACTERIZED PROTEIN C18G6.09C
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 156-181
    Gene: SPAC18G6.09C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JP4)

(-) Sites  (0, 0)

(no "Site" information available for 5JP4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JP4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JP4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JP4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JP4)

(-) Exons   (0, 0)

(no "Exon" information available for 5JP4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeee....eeeeeee......eeee..hhh.eeee..eeeeee...eeeeeee.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jp4 A   2 EDENILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARVGYVILNRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLLR 127
                                    11        21        31        41        51        61        71        81        91       101       111       121      


Chain B from PDB  Type:PROTEIN  Length:19
                                                   
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author .ee....hhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                 5jp4 B 142 AMSFHSPAASNLPIPTFLH 179
                               ||  170         
                             145|              
                              165
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JP4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JP4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JP4)

(-) Gene Ontology  (20, 22)

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  YAQ9_SCHPO | Q10108
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCP1_SCHPO | Q9P805: 2qkl 2qkm 5j3q 5j3t 5j3y 5kq1 5kq4 5n2v
        YAQ9_SCHPO | Q10108: 5j3q 5j3t 5n2v

(-) Related Entries Specified in the PDB File

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