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(-) Description

Title :  FCHO1 MU HOMOLOGY DOMAIN (DANIO RERIO) WITH BOUND EPS15 PEPTIDE
 
Authors :  A. J. Mccoy, A. Wrobel, D. J. Owen
Date :  03 May 16  (Deposition) - 08 Jun 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,E,F
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Keywords :  Fcho Eps15 Mu Homology Domain Endocytosis, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ma, P. K. Umasankar, A. G. Wrobel, A. Lymar, A. J. Mccoy, S. S. Holkar, A. Jha, T. Pradhan-Sundd, S. C. Watkins, D. J. Owen, L. M. Traub
Transient Fcho1/2Eps15/Rap-2 Nanoclusters Prime The Ap-2 Clathrin Adaptor For Cargo Binding.
Dev. Cell V. 37 428 2016
PubMed-ID: 27237791  |  Reference-DOI: 10.1016/J.DEVCEL.2016.05.003

(-) Compounds

Molecule 1 - EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE 15
    Chains: E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 615-637
    Gene: EPS15, AF1P
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN EPS15,PROTEIN AF-1P
 
Molecule 2 - F-BAR DOMAIN ONLY PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 615-900
    Gene: FCHO1
    Organism Common: ZEBRAFISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABEF
Biological Unit 1 (1x): A E 
Biological Unit 2 (1x):  B F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:1031 , CYS A:1033 , HIS B:1031 , CYS B:1033binding site for residue ZN A 1201

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:1017 -A:1150
2B:1017 -B:1150

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gln A:1061 -Pro A:1062
2Gln B:1061 -Pro B:1062

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JP2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JP2)

(-) Exons   (0, 0)

(no "Exon" information available for 5JP2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeeeeeee.......eeeeeeeeeeeeee.hhhhhhhhh......eeeee......eeee....eee........eeeeeehhhhhhhhhhhhhhhh....eeeeeeeeeeeee.hhhhh.eeeeeeeeee..eeeeeeeeee..........eeeeeeee.....eeeeee...eee....eeeee.......hhhhheeeeeeeee.......eeeeeeeee.......eeee....eeeeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jp2 A  877 LSAQESWPVAAAITEYINAYFRGGEHNRCLVKITGDLTMSFPAGITRIFTANPNAPVLSFRLVNISRVDHFLPNQKLLYSDPSQSDPDTKDFWFNMQALTLHLQREAELNPQASYYNVALLKYQASSQDPSRAPLLLSAECQRSGTVTRVSLDYHCCPATAPATQLTSVQVLLPLDHSATDLQCQPPAAWNAEERRLLWKLANLSPTNHSKGSGTLCASWQCLEGPAPSLAVQFVGSGASLSGLDVELVGSRYRMSLVKKRFATGKYMAGCS 1151
                                   886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096   || 1109      1119      1129      1139      1149  
                                                                                                                                                                                                                                                        1100|                                               
                                                                                                                                                                                                                                                         1104                                               


Chain B from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeeeeeeee.......eeeeeeeeeeeeee.hhhhhhhhh......eeeee......eeee....eee........eeeeeehhhhhhhhhhhhhhhh....eeeeeeeeeeeee.hhhhh.eeeeeeeeee..eeeeeeeeee..........eeeeeeee.....eeeeee...eee....eeeee.......hhhhheeeeeeeee....eeeeeeeee.......eeeee...eeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5jp2 B  877 LSAQESWPVAAAITEYINAYFRGGEHNRCLVKITGDLTMSFPAGITRIFTANPNAPVLSFRLVNISRVDHFLPNQKLLYSDPSQSDPDTKDFWFNMQALTLHLQREAELNPQASYYNVALLKYQASSQDPSRAPLLLSAECQRSGTVTRVSLDYHCCPATAPATQLTSVQVLLPLDHSATDLQCQPPAAWNAEERRLLWKLANLSPTNHSKGSGTLCASWQCPAPSLAVQFVGSGASLSGLDVELVGSRYRMSLVKKRFATGKYMAGCSL 1152
                                   886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096 ||   1112      1122      1132      1142      1152
                                                                                                                                                                                                                                                      1098|                                               
                                                                                                                                                                                                                                                       1105                                               


Chain E from PDB  Type:PROTEIN  Length:18
                                                   
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author .................. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                5jp2 E  620 FQSDPFVGSDPFKDDPFG  637
                                   629        


Chain F from PDB  Type:PROTEIN  Length:18
                                                   
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author .................. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                5jp2 F  620 FQSDPFVGSDPFKDDPFG  637
                                   629
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JP2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JP2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JP2)

(-) Gene Ontology  (31, 31)

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  EPS15_HUMAN | P42566
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EPS15_HUMAN | P42566: 1c07 1eh2 1f8h 1ff1 2iv9 2jxc 4rh5 4rh9 4rhg 4s0g 5awt 5awu

(-) Related Entries Specified in the PDB File

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