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(-) Description

Title :  HENBANE PREMNASPIRODIENE SYNTHASE (HPS), ALSO KNOWN AS HENBANE VETISPIRADIENE SYNTHASE (HVS) FROM HYOSCYAMUS MUTICUS
 
Authors :  H. J. Koo, Y. Xu, G. V. Louie, M. Bowman, J. P. Noel
Date :  02 May 16  (Deposition) - 03 May 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Terpene Synthase, Hps, Hyoscyamus, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Koo, Y. Xu, G. V. Louie, M. Bowman, J. P. Noel
Functional Study Of Terpene Synthase From 512 Mutant Librar Of Henbane Premnaspirodiene Synthase Reveals Protein Residu Interactions
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - VETISPIRADIENE SYNTHASE 1
    Chains: A, B, C, D
    EC Number: 4.2.3.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PH9GW
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 23-555
    Organism Common: EGYPTIAN HENBANE
    Organism Scientific: HYOSCYAMUS MUTICUS
    Organism Taxid: 35626
    Other Details: HPS WITH 22 AMINO ACIDS TRUNCATED AT N-TERMINUS. GS AT N-TERMINUS IS FROM CLEAVED THROMBIN SITE.
    Synonym: HVS1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JO7)

(-) Sites  (0, 0)

(no "Site" information available for 5JO7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JO7)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric Unit
No.Residues
1Ser A:192 -Pro A:193
2Gly A:463 -Gln A:464
3Arg A:504 -Pro A:505
4Asn B:38 -Gln B:39
5Ser B:60 -Ala B:61
6Ala B:61 -Ala B:62
7Gln B:464 -Ile B:465
8Arg B:504 -Pro B:505
9Glu C:105 -Ala C:106
10Ser C:192 -Pro C:193
11Glu C:457 -Val C:458
12Ala C:466 -Thr C:467
13Thr C:467 -Gly C:468
14Glu C:485 -Lys C:486
15Arg C:504 -Pro C:505
16Glu D:105 -Ala D:106
17His D:107 -Glu D:108
18Lys D:460 -Gly D:461
19Arg D:504 -Pro D:505

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JO7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JO7)

(-) Exons   (0, 0)

(no "Exon" information available for 5JO7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jo7 A  37 DNQVAEKYAQEIETLKEQTSTMLSAACGTTLTEKLNLIDIIERLGIAYHFEKQIEDMLDHIYRADPYFEAHEYNDLNTSSVQFRLLRQHGYNVSPNIFSRFQDANGKFKESLRSDIRGLLNLYEASHVRTHKEDILEEALVFSVGHLESAAPHLKSPLSKQVTHALEQSLHKSIPRVEIRYFISIYEEEEFKNDLLLRFAKLDYNLLQMLHKHELSEVSRWWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGIVKELEVYTDAIQRWDISQIDRLPEYMKISYKALLDLYDDYEKELSKDGRSDVVHYAKERMKEIVRNYFIEAKWFIEGYMPSVSEYLSNALATSTYYLLTTTSYLGMKSATKEHFEWLATNPKILEANATLCRVVDDIATYEVEKGRGQIATGIECYMRDYGVSTEVAMEKFQEMADIAWKDVNEEILRPTPVSSEILTRILNLARIIDVTYKEKVLKPHIIALVVDSIDI 555
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526 ||    545       555
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     528|                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      538                 


Chain B from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jo7 B  38 NQVAEKYAQEIETLKEQTSTMLSAACGTTLTEKLNLIDIIERLGIAYHFEKQIEDMLDHIYRADPYFEAHEYNDLNTSSVQFRLLRQHGYNVSPNIFSRFQDANGKFKESLRSDIRGLLNLYEASHVRTHKEDILEEALVFSVGHLESAAPHLKSPLSKQVTHALEQSLHKSIPRVEIRYFISIYEEEEFKNDLLLRFAKLDYNLLQMLHKHELSEVSRWWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGIVKELEVYTDAIQRWDISQIDRLPEYMKISYKALLDLYDDYEKELSKDGRSDVVHYAKERMKEIVRNYFIEAKWFIEGYMPSVSEYLSNALATSTYYLLTTTSYLGMKSATKEHFEWLATNPKILEANATLCRVVDDIATYEVQIATGIECYMRDYGVSTEVAMEKFQEMADIAWKDVNEEILRPTPVSSEILTRILNLARIIDVTYKHPEKVLKPHIIALVVDSIDI 555
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457||     472       482       492       502       512       522     ||539       549      
                                                                                                                                                                                                                                                                                                                                                                                                                                                              458|                                                             528|                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                               464                                                              536                   


Chain C from PDB  Type:PROTEIN  Length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jo7 C  39 QVAEKYAQEIETLKEQTSTMLSAACGTTLTEKLNLIDIIERLGIAYHFEKQIEDMLDHIYRADPYFEAHEYNDLNTSSVQFRLLRQHGYNVSPNIFSRFQDANGKFKESLRSDIRGLLNLYEASHVRTHKEDILEEALVFSVGHLESAAPHLKSPLSKQVTHALEQSLHKSIPRVEIRYFISIYEEEEFKNDLLLRFAKLDYNLLQMLHKHELSEVSRWWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGIVKELEVYTDAIQRWDISQIDRLPEYMKISYKALLDLYDDYEKELSKDGRSDVVHYAKERMKEIVRNYFIEAKWFIEGYMPSVSEYLSNALATSTYYLLTTTSYLGMKSATKEHFEWLATNPKILEANATLCRVVDDIATYEVEATGIECYMRDYGVSTEVAMEKFQEMADIAWKDVNEEILRPTPVSSEILTRILNLARIIDVTYKPEKVLKPHIIALVVDSIDI 555
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458||     474       484       494       504       514       524   ||  542       552   
                                                                                                                                                                                                                                                                                                                                                                                                                                                              459|                                                           528|                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                               466                                                            537                  


Chain D from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jo7 D  45 AQEIETLKEQTSTMLSAACGTTLTEKLNLIDIIERLGIAYHFEKQIEDMLDHIYRADPYFEAHEYNDLNTSSVQFRLLRQHGYNVSPNIFSRFQDANGKFKESLRSDIRGLLNLYEASHVRTHKEDILEEALVFSVGHLESAAPHLKSPLSKQVTHALEQSLHKSIPRVEIRYFISIYEEEEFKNDLLLRFAKLDYNLLQMLHKHELSEVSRWWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGIVKELEVYTDAIQRWDISQIDRLPEYMKISYKALLDLYDDYEKELSKDGRSDVVHYAKERMKEIVRNYFIEAKWFIEGYMPSVSEYLSNALATSTYYLLTTTSYLGMKSATKEHFEWLATNPKILEANATLCRVVDDIATYEVEKGIATGIECYMRDYGVSTEVAMEKFQEMADIAWKDVNEEILRPTPVSSEILTRILNLARIIDVTYKEKVLKPHIIALVVDSIDI 555
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454      |467       477       487       497       507       517       527||     546         
                                                                                                                                                                                                                                                                                                                                                                                                                                                          461|                                                            528|                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                           465                                                             538
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JO7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JO7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JO7)

(-) Gene Ontology  (8, 8)

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  Cis Peptide Bonds
    Ala B:61 - Ala B:62   [ RasMol ]  
    Ala C:466 - Thr C:467   [ RasMol ]  
    Arg A:504 - Pro A:505   [ RasMol ]  
    Arg B:504 - Pro B:505   [ RasMol ]  
    Arg C:504 - Pro C:505   [ RasMol ]  
    Arg D:504 - Pro D:505   [ RasMol ]  
    Asn B:38 - Gln B:39   [ RasMol ]  
    Gln B:464 - Ile B:465   [ RasMol ]  
    Glu C:105 - Ala C:106   [ RasMol ]  
    Glu C:457 - Val C:458   [ RasMol ]  
    Glu C:485 - Lys C:486   [ RasMol ]  
    Glu D:105 - Ala D:106   [ RasMol ]  
    Gly A:463 - Gln A:464   [ RasMol ]  
    His D:107 - Glu D:108   [ RasMol ]  
    Lys D:460 - Gly D:461   [ RasMol ]  
    Ser A:192 - Pro A:193   [ RasMol ]  
    Ser B:60 - Ala B:61   [ RasMol ]  
    Ser C:192 - Pro C:193   [ RasMol ]  
    Thr C:467 - Gly C:468   [ RasMol ]  
 
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  5jo7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5ik0 TEAS WITH FPP
5ik6 TEAS WITH GERMACRENE A AND PPI
5ika TEAS WITH PPI
5ikh TEAS-M4 WITH PREMNASPIRODIENE