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(-) Description

Title :  STRUCTURE OF PEROXIREDOXIN-1 FROM SCHISTOSOMA JAPONICUM
 
Authors :  Q. Wu, F. Huang, D. Zeng, X. Liu, J. Zhao, H. Wang, Y. Peng, P. Li, Y. Li
Date :  27 Apr 16  (Deposition) - 03 May 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Peroxiredoxin-1, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Li, Y. Li
Crystal Structure Of Peroxiredoxin-1 From Schistosoma Japonicum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THIOREDOXIN PEROXIDASE-1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SJTPX-1
    Organism Common: BLOOD FLUKE
    Organism Scientific: SCHISTOSOMA JAPONICUM
    Organism Taxid: 6182

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JLY)

(-) Sites  (0, 0)

(no "Site" information available for 5JLY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JLY)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JLY)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee..eeeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jly A   1 MVLIPNKPAPEFHGCAVIDGDFKEINLKDYSGKYVVLFFYPADFTFVCPTEIIAFSDEVDQFKSRNCQVIACSTDSKYSHLAWTKQDRKSGGLGDMRIPLLADPTKSIARAYGVLDEEEGNAFRGLFIIDPKGILRQITVNDKPVGRSVDETLRLLDAFQFVEKYGE 167
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee....eeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jly B   1 MVLIPNKPAPEFHGCAVIDGDFKEINLKDYSGKYVVLFFYPADFTFVCPTEIIAFSDEVDQFKSRNCQVIACSTDSKYSHLAWTKQDRKSGGLGDMRIPLLADPTKSIARAYGVLDEEEGNAFRGLFIIDPKGILRQITVNDKPVGRSVDETLRLLDAFQFVEKYGE 167
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       


Chain C from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....eeeee....eeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee....ee.eeeeee....eeeeeeee......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jly C   1 MVLIPNKPAPEFHGCAVIDGDFKEINLKDYSGKYVVLFFYPADFTFVCPTEIIAFSDEVDQFKSRNCQVIACSTDSKYSHLAWTKQDRKSGGLGDMRIPLLADPTKSIARAYGVLDEEEGNAFRGLFIIDPKGILRQITVNDKPVGRSVDETLRLLDAFQFVEKYG 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JLY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JLY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JLY)

(-) Gene Ontology  (6, 6)

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