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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HAT DOMAIN OF SART3 IN COMPLEX WITH USP15 DUSP-UBL DOMAIN
 
Authors :  A. Dong, Q. Zhang, J. R. Walker, C. Bountra, C. H. Arrowsmith, A. M. Edwar Y. Tong, Structural Genomics Consortium (Sgc)
Date :  25 Apr 16  (Deposition) - 04 May 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.01
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sart3, Hat, Dusp-Ubl, Structural Genomics, Structural Genomics Consortium, Sgc, Rna-Binding Protein-Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Zhang, A. Dong, J. R. Walker, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong
Crystal Structure Of The Hat Domain Of Sart3 In Complex Wit Usp15 Dusp-Ubl Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNIZED BY T-CELLS 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21-CODONPLUS-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 280-578
    Gene: SART3, KIAA0156, TIP110
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SART-3,TAT-INTERACTING PROTEIN OF 110 KDA,TIP110,P110 NUCLEAR RNA-BINDING PROTEIN
 
Molecule 2 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15
    Chains: B
    EC Number: 3.4.19.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21-CODONPLUS-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-223
    Gene: USP15, KIAA0529
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DEUBIQUITINATING ENZYME 15,UBIQUITIN THIOESTERASE 15, UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 15,UNPH-2,UNPH4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3UNX1Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:346 , ARG A:349binding site for residue EDO A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JJW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:307 -Pro A:308

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JJW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JJW)

(-) Exons   (0, 0)

(no "Exon" information available for 5JJW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jjw A 280 SVIQNYNKALQQLEKYKPYEEALLQAEAPRLAEYQAYIDFEmKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRYLLAmERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVImQNWARIEARLCNNmQKARELWDSImTRGNAKYANmWLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTmERTEGSLEDWDIAVQKTETRLAR 575
                                   289       299       309       319 |     329       339       349       359       369       379       389       399       409       419       429       439       449       459       469     | 479       489       499|      509|      519       529       539       549  |    559       569      
                                                                   321-MSE                                                             389-MSE                                                                               475-MSE       489-MSE    500-MSE   510-MSE                                   552-MSE                   


Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhh..........hhhhh.........................eeeeehhhhhhhhhhhh........eeeeeee.....eeee...........hhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jjw B   6 AADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQmGDQNVYPGPIDNSGLLKDGDSLKEHLIDELDYILLPTEGWNKLVSWYTLmEGQEPIARKVVEQGmFVKHCKVEVYLTEFSKADTIDTIEKSTIQDAGLY 204
                                    15        25        35        45        55        65        75|       87        97       107       117    |  127       153       163|        
                                                                            55-MSE              75|                          107-MSE        122-MSE      135|        163|        
                                                                                                 78                                                       152         196
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JJW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JJW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JJW)

(-) Gene Ontology  (50, 53)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:307 - Pro A:308   [ RasMol ]  
 

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  5jjw
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  SART3_HUMAN | Q15020
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SART3_HUMAN | Q15020: 2do4 5ctq 5ctr 5ctt 5jjx 5jpz
        UBP15_HUMAN | Q9Y4E8: 1w6v 3lmn 3ppa 3pv1 3t9l 4a3o 4a3p

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JJW)