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(-) Description

Title :  CRYSTAL STRUCTURE OF FUNGAL MAGKATG2 AT PH 3.0
 
Authors :  B. Gasselhuber, C. Obinger, X. Carpena
Date :  21 Apr 16  (Deposition) - 22 Jun 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Gasselhuber, M. M. Graf, C. Jakopitsch, M. Zamocky, A. Nicolussi, P. G. Furtmuller, C. Oostenbrink, X. Carpena, C. Obinger
Interaction With The Redox Cofactor Myw And Functional Role Of A Mobile Arginine In Eukaryotic Catalase-Peroxidase.
Biochemistry V. 55 3528 2016
PubMed-ID: 27293030  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00436

(-) Compounds

Molecule 1 - CATALASE-PEROXIDASE 2
    Chains: A, B
    EC Number: 1.11.1.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: KATG2, CPXB, MAGKATG2, MGG_09834
    Organism Common: RICE BLAST FUNGUS
    Organism Scientific: MAGNAPORTHE ORYZAE (STRAIN 70-15 / ATCC MYA- 4617 / FGSC 8958)
    Organism Taxid: 242507
    Strain: 70-15 / ATCC MYA-4617 / FGSC 8958
    Synonym: CP 2,PEROXIDASE/CATALASE 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1FLC5Ligand/IonCITRATE ANION
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:133 , LEU A:134 , TRP A:140 , VAL A:274 , LEU A:309 , GLY A:313 , HIS A:314 , PHE A:316 , GLY A:317 , LYS A:318 , THR A:319 , HIS A:320 , THR A:358 , SER A:359 , TRP A:365 , SER A:423 , HOH A:957 , HOH A:1058 , HOH A:1128 , HOH A:1462binding site for residue HEM A 801
2AC2SOFTWAREASP A:512 , VAL A:513 , SER A:514 , LYS A:596 , ASP A:600 , LYS A:692 , GLY A:693 , HOH A:975binding site for residue FLC A 802
3AC3SOFTWAREASP A:170 , VAL A:239 , PRO A:240 , LEU A:271 , ASN A:275 , PRO A:276 , GLU A:277 , SER A:359 , HOH A:1386binding site for residue FLC A 803
4AC4SOFTWAREGLY B:133 , LEU B:134 , TRP B:140 , VAL B:274 , LEU B:309 , ILE B:310 , GLY B:313 , HIS B:314 , PHE B:316 , GLY B:317 , LYS B:318 , THR B:319 , HIS B:320 , THR B:358 , SER B:359 , TRP B:365 , SER B:423 , HOH B:1640 , HOH B:1722 , HOH B:1736 , HOH B:1995binding site for residue HEM B 1500
5AC5SOFTWAREASP B:512 , VAL B:513 , SER B:514 , LYS B:692 , GLY B:693 , HOH B:2167 , HOH B:2236binding site for residue FLC B 1501
6AC6SOFTWAREASP B:170 , VAL B:239 , PRO B:240 , LEU B:271 , ASN B:275 , PRO B:276 , GLU B:277 , SER B:359 , HOH B:2155binding site for residue FLC B 1502
7AC7SOFTWAREARG A:439 , HIS A:443 , THR B:366 , LYS B:367 , GLY B:375 , HOH B:1612 , HOH B:1626 , HOH B:1657 , HOH B:2164binding site for residue FLC B 1503
8AC8SOFTWAREVAL B:136 , ARG B:137 , MET B:138 , ALA B:139 , HIS B:141 , SER B:142 , ALA B:143 , GLY B:144 , ALA B:266 , THR B:267 , LEU B:271 , ILE B:272 , VAL B:274 , PHE B:296 , MET B:299 , LEU B:458 , HEM B:1500 , HOH B:1732 , HOH B:1878 , HOH B:1995binding site for Di-peptide TRP B 140 and TYR B 273
9AC9SOFTWARETRP B:140 , GLY B:144 , TYR B:146 , ALA B:265 , ALA B:266 , THR B:267 , LEU B:271 , ILE B:272 , VAL B:274 , ALA B:295 , PHE B:296 , GLY B:297 , ARG B:298 , GLY B:300 , MET B:301 , HOH B:1732 , HOH B:1878 , HOH B:1945binding site for Di-peptide TYR B 273 and MET B 299

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:55 -B:74
2A:74 -B:55
3B:523 -B:536

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:163 -Pro A:164
2Val A:239 -Pro A:240
3Lys A:262 -Pro A:263
4Glu A:544 -Pro A:545
5Ala B:163 -Pro B:164
6Val B:239 -Pro B:240
7Lys B:262 -Pro B:263
8Glu B:544 -Pro B:545

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JHX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JHX)

(-) Exons   (0, 0)

(no "Exon" information available for 5JHX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:735
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhh.....hhhhh..hhhhh......hhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................................................................hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........hhhhh..hhhhhhhhhh...........hhhhh.................hhhhhhhhhh..eeee.....eeee.......eee..eeeeee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.........hhhhh..........hhhhhhhhhhhhhh....hhhhhhhhhhhhhh.............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhh....ee....ee......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....................hhhhhhhh...eeeee......eeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jhx A  50 TTFGRCAVKSNQAGGGTRSHDWWPCQLRLDVLRQFQPSQNPLGGDFDYAEAFQSLDYEAVKKDIAALMTESQDWWPADFGNYGGLFVRMAWHSAGTYRAMDGRGGGGMGQQRFAPLNSWPDNQNLDKARRLIWPIKQKYGNKISWADLMLLTGNVALENMGFKTLGFGGGRADTWQSDEAVYWGAETTFVPQGNDVRYNNSVDINARADKLEKPLAATHMGLIYVNPEGPNGTPDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGAVKGSNIGPAPEAADLGMQGLGWHNSVGDGNGPNQMTSGLEVIWTKTPTKWSNGYLESLINNNWTLVESPAGAHQWEAVNGTVDYPDPFDKTKFRKATMLTSDLALINDPEYLKISQRWLEHPEELADAFAKAWFKLLHRDLGPTTRYLGPEVPKESFIWQDPLPAREGDLIDDADVDKLKAAILSTDGLDVSKLASTAMACATTYRNSDKRGGCNGARIALEPQRNWVSNNPTQLSAVLDALKKVQSDFNGSNGNKKVSLADLIVLGGTAAVEKAAKDAGVDIKVPFSAGRVDATQEQTDVTQFSYLEPQADGFRNYGRGTARARTEEIMVDKASQLTLTPPELTVLVGGMRALGANYDGSDVGVFTANKGKLTPDFFVNLVDMNIAWTASGADGESWVGTDRKSRSEKYKGSRADLVFGSHAELRAIAEVYAENGNQEKFVKDFVAAWTKVMNLDRFDLKV 784
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779     


Chain B from PDB  Type:PROTEIN  Length:734
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhh.....hhhhh..hhhhh......hhhhhhhh.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................................hhhhh.......hhhhh.................hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........hhhhh..hhhhhhhhhh...........hhhhh.................hhhhhhhhhh..eeee.....eeee.......eee..eeeeee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh..........hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhh....eehhhhee......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....................hhhhhhhh...eeeee......eeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jhx B  50 TTFGRCAVKSNQAGGGTRSHDWWPCQLRLDVLRQFQPSQNPLGGDFDYAEAFQSLDYEAVKKDIAALMTESQDWWPADFGNYGGLFVRMAWHSAGTYRAMDGRGGGGMGQQRFAPLNSWPDNQNLDKARRLIWPIKQKYGNKISWADLMLLTGNVALENMGFKTLGFGGGRADTWQSDEAVYWGAETTFVPQGNDVRYNNSVDINARADKLEKPLAATHMGLIYVNPEGPNGTPDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGAVKGSNIGPAPEAADLGMQGLGWHNSVGDGNGPNQMTSGLEVIWTKTPTKWSNGYLESLINNNWTLVESPAGAHQWEAVNGTVDYPDPFDKTKFRKATMLTSDLALINDPEYLKISQRWLEHPEELADAFAKAWFKLLHRDLGPTTRYLGPEVPKESFIWQDPLPAREGDLIDDADVDKLKAAILSTDGLDVSKLASTAMACATTYRNSDKRGGCNGARIALEPQRNWVSNNPTQLSAVLDALKKVQSDFNGSNGNKKVSLADLIVLGGTAAVEKAAKDAGVDIKVPFSAGRVDATQEQTDVTQFSYLEPQADGFRNYGRGTARARTEEIMVDKASQLTLTPPELTVLVGGMRALGANYDGSDVGVFTANKGKLTPDFFVNLVDMNIAWTASGADGESWVGTDRKSRSEKYKGSRADLVFGSHAELRAIAEVYAENGNQEKFVKDFVAAWTKVMNLDRFDLK 783
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JHX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JHX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JHX)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  KATG2_MAGO7 | A4QUT2
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  1.11.1.21
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 Related Entries

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UniProtKB/Swiss-Prot
        KATG2_MAGO7 | A4QUT2: 3ut2 5cjh 5jhy 5jhz

(-) Related Entries Specified in the PDB File

3ut2