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(-) Description

Title :  MOLECULAR INSIGHT INTO THE REGULATORY MECHANISM OF THE QUORUM-SENSING REPRESSOR RSAL IN PSEUDOMONAS AERUGINOSA
 
Authors :  J. Zhao, J. Gan, J. Zhang, H. Kang, W. Kong, M. Zhu, F. Li, Y. Song, J. Qin, H
Date :  30 Mar 16  (Deposition) - 12 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,F,R,f,r
Biol. Unit 1:  A,F,r  (1x)
Biol. Unit 2:  B,R,f  (1x)
Keywords :  Quorum-Sensing Repressor, Gene Regulation, Rsal-Dna Complex, Gene Regulation-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhao, J. Gan, J. Zhang, H. Kang, W. Kong, M. Zhu, F. Li, Y. Song, J. Qin, H. Liang
Molecular Insight Into The Regulatory Mechanism Of The Quorum-Sensing Repressor Rsal In Pseudomonas Aeruginosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - REGULATORY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: RSAL
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: REGULATORY PROTEIN RSAL,RSAL PROTEIN,UNCHARACTERIZED PROTEIN,VIRULENCE GENE REPRESSOR RSAL
 
Molecule 2 - DNA (26-MER)
    Chains: F, f
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA (26-MER)
    Chains: R, r
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABFRfr
Biological Unit 1 (1x): A F  r
Biological Unit 2 (1x):  B Rf 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5J2Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J2Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J2Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J2Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J2Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5J2Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:70
                                                                                                     
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  5j2y A  7 TQPQNmAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFPIYLLLHFYIEGQITDRQLADLRG 76
                                 |  16        26        36        46        56        66        76
                                 |                                                                
                                12-MSE                                                            


Chain B from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  5j2y B  9 PQNmAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFPIYLLLHFYIEGQITDRQLADLRG 76
                               |    18        28        38        48        58        68        
                              12-MSE                                                            


Chain F from PDB  Type:DNA  Length:26
                                                         
                  5j2y F  1 AAAAATTATGAAATTTGCATAAATTC 26
                                    10        20      


Chain R from PDB  Type:DNA  Length:25
                                                        
                  5j2y R  2 GAATTTATGCAAATTTCATAATTTT 26
                                    11        21     


Chain f from PDB  Type:DNA  Length:25
                                                        
                  5j2y f  2 AAAATTATGAAATTTGCATAAATTC 26
                                    11        21     


Chain r from PDB  Type:DNA  Length:26
                                                         
                  5j2y r  1 TGAATTTATGCAAATTTCATAATTTT 26
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J2Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J2Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J2Y)

(-) Gene Ontology  (8, 8)

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