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(-) Description

Title :  STRUCTURE OF THE CORE DOMAINE OF KNR4, AN INTRINSICALLY DISORDERED PROTEIN FROM SACCHAROMYCES CEREVISIAE - WT.
 
Authors :  L. Maveyraud, M. Batista, H. Martin-Yken, J. M. Francois, D. Zerbib, L.
Date :  29 Mar 16  (Deposition) - 05 Apr 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Knr4, Antitoxin, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Batista, L. Maveyraud, D. Zerbib
Structural And Biophysical Characterization Of Knr4, An Intrinsically Disordered Hub Protein Form Saccharomyces Cerevisiae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CELL WALL ASSEMBLY REGULATOR SMI1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P3
    Expression System Strain: MC1061
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 80-340
    Gene: SMI1, KNR4, KTR4, YGR229C, G8553
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: KILLER TOXIN-RESISTANCE PROTEIN 4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5J1B)

(-) Sites  (0, 0)

(no "Site" information available for 5J1B)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J1B)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ile A:223 -Pro A:224
2Ile B:223 -Pro B:224

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J1B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J1B)

(-) Exons   (0, 0)

(no "Exon" information available for 5J1B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhh.........eeeeeeee.hhhhhhhhhhhhhhhhhhhhhh....eee.............eeeeee....eeeeee..........eeeeee....eeeeee.hhhhhhhhhhhhhhh...ee....eeee.......eehhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j1b A  84 NDGVSETLLAWRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQEDTSGLFYGFQLMTLDQVVAMTQAWRNVAKNLNKRSPDQKSIPPNAVQPVYAHPAWIPLITDNAGNHIGVDLAPGPNGKYAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNWYLVDGELVFRDKKSNGPIQDYFEVLKRRTWIKYQLERPHRD 347
                                    93       103       113       123       133       143    || 159       169       179       218       228       238       248       258       268       278       288       298 ||    317       327       337       347
                                                                                          148|                              188|                                                                               300|                                     
                                                                                           155                               218                                                                                310                                     


Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhh...............eeeeeeee.hhhhhhhhhhhhhhhhhhh......eee.............eeeeee....eeeeee..........eeeeee....eeeeee.hhhhhhhhhhhhhhh...ee....eeee.......eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j1b B  84 NDGVSETLLAWRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQEDLESMTGTSGLFYGFQLMTLDQVVAMTQAWRNVAKNLNKIPDQKSIPPNAVQPVYAHPAWIPLITDNAGNHIGVDLAPGPNGKYAQIITFGRDFDTKFVIAENWGEFLLSFANDLEAGNWYLVDGELVFRDKKSNGPIQDYFEVLKRRTWIKYQL 341
                                    93       103       113       123       133       143       153       163       173       183  ||   223       233       243       253       263       273       283       293      |312       322       332         
                                                                                                                                186|                                                                                300|                               
                                                                                                                                 217                                                                                 310
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J1B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J1B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J1B)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:223 - Pro A:224   [ RasMol ]  
    Ile B:223 - Pro B:224   [ RasMol ]  
 

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