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(-) Description

Title :  GROUND STATE SAMPLED DURING RDC RESTRAINED REPLICA-AVERAGED METADYNAMICS (RAM) SIMULATIONS OF THE HIV-1 TAR COMPLEXED WITH CYCLIC PEPTIDE MIMETIC OF TAT
 
Authors :  A. N. Borkar, M. F. Bardaro Jr. , G. Varani, M. Vendruscolo
Date :  28 Mar 16  (Deposition) - 08 Jun 16  (Release) - 01 Feb 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Tar:Tat Complex, Ram Simulations, Residual Dipolar Couplings, Ground State, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. N. Borkar, M. F. Bardaro, C. Camilloni, F. A. Aprile, G. Varani, M. Vendruscolo
Structure Of A Low-Population Binding Intermediate In Protein-Rna Recognition.
Proc. Natl. Acad. Sci. Usa V. 113 7171 2016
PubMed-ID: 27286828  |  Reference-DOI: 10.1073/PNAS.1521349113

(-) Compounds

Molecule 1 - CYCLIC PEPTIDE MIMETIC OF HIV-1 TAT
    ChainsA
    EngineeredYES
    Organism ScientificHUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid11676
    SyntheticYES
 
Molecule 2 - APICAL REGION (29-MER) OF THE HIV-1 TAR RNA ELEMENT
    ChainsB
    EngineeredYES
    Expression SystemIN VITRO TRANSCRIPTION VECTOR PT7-FLUC(DELTAI)
    Expression System Taxid905932
    Organism ScientificHUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid11676

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1DPR1Mod. Amino AcidD-PROLINE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1DPR1Mod. Amino AcidD-PROLINE

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:14
                                             
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .eeee..eeee... Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                  5j0m A  1 RVRTRKGRRIRIxP 14
                                    10  | 
                                       13-DPR

Chain B from PDB  Type:RNA  Length:29
                                                            
                  5j0m B 17 GGCAGAUCUGAGCCUGGGAGCUCUCUGCC 45
                                    26        36         

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

2kdq STARTING STRUCTURE FOR THE REPLICA-AVERAGED-METADYNAMICS (RAM) SIMULATION RELATED ID: 30046 RELATED DB: BMRB