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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE MORC3 ATPASE-CW CASSETTE IN COMPLEX WITH AMPPNP AND H3K4ME3 PEPTIDE
 
Authors :  S. Li, J. Du, D. J. Patel
Date :  23 Mar 16  (Deposition) - 17 Aug 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,P,Q
Keywords :  Morc3, Atpase, Cw Domain, H3K4Me3, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Li, L. Yen, W. A. Pastor, J. B. Johnston, J. Du, C. J. Shew, W. Liu, J. Ho B. Stender, A. T. Clark, A. L. Burlingame, L. Daxinger, D. J. Patel, S. E. Jacobsen
Mouse Morc3 Is A Ghkl Atpase That Localizes To H3K4Me3 Marked Chromatin
Proc. Natl. Acad. Sci. Usa V. 113 E5108 2016
PubMed-ID: 27528681  |  Reference-DOI: 10.1073/PNAS.1609709113

(-) Compounds

Molecule 1 - MORC FAMILY CW-TYPE ZINC FINGER PROTEIN 3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-SUMO
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 7-456
    Gene: MORC3
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: NUCLEAR MATRIX PROTEIN 2,ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3
 
Molecule 2 - PEPTIDE FROM HISTONE H3.1
    Chains: P, Q
    Engineered: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABPQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2M3L2Mod. Amino AcidN-TRIMETHYLLYSINE
3MG2Ligand/IonMAGNESIUM ION
4ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:413 , CYS A:416 , CYS A:435 , CYS A:446binding site for residue ZN A 501
2AC2SOFTWAREGLU A:35 , ASN A:39 , ASP A:44 , VAL A:45 , ASP A:67 , MET A:72 , MET A:80 , SER A:86 , LYS A:88 , GLY A:98 , LEU A:99 , TYR A:100 , GLY A:101 , ASN A:102 , GLY A:103 , PHE A:104 , LYS A:105 , THR A:194 , LYS A:358 , MG A:503 , HOH A:616 , HOH A:621binding site for residue ANP A 502
3AC3SOFTWAREGLU A:35 , ASN A:39 , ANP A:502 , HOH A:604 , HOH A:621binding site for residue MG A 503
4AC4SOFTWARECYS B:413 , CYS B:416 , CYS B:435 , CYS B:446binding site for residue ZN B 501
5AC5SOFTWAREGLU B:35 , ASN B:39 , ASP B:44 , VAL B:45 , ASP B:67 , MET B:72 , MET B:80 , SER B:86 , LYS B:88 , GLY B:98 , LEU B:99 , TYR B:100 , GLY B:101 , ASN B:102 , GLY B:103 , PHE B:104 , LYS B:105 , THR B:194 , LYS B:358 , MG B:503 , HOH B:601 , HOH B:603 , HOH B:608 , HOH B:609 , HOH B:615 , HOH B:616binding site for residue ANP B 502
6AC6SOFTWAREASN B:39 , ANP B:502 , HOH B:603 , HOH B:609binding site for residue MG B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IX1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IX1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IX1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IX1)

(-) Exons   (0, 0)

(no "Exon" information available for 5IX1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhh.....hhhhhhhhhhhhhhh......eeeeeeeee..eeeeeeee.....hhhhhhhhh....................hhhhhhhhhheeeeeeeeee..eeeeeeeehhhhhhh........eeeee....eehhhhhhhhhhhhhhhh...hhhhhhhhhhh....eeeeeeeeee..............................hhhhhhhhhhhhhh......eeee..ee.........eeeeeeeee........eeeeeeee.......eeeeee..eeeeeee..........eeeeee...............hhhhhhhhhhhhhhhhhhhhhhh....eeeee......eeee...........hhhhh.hhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ix1 A   8 GIRLSALCPKFLHTNSTSHTWPFSAVAELIDNAYDPDVNAKQIWIDKTVISDHICLTFTDNGNGMTADKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAMVFTKNGETMSVGFLSQTYLEVIKAEHVVVPIVTFNKHRQMINLTESKASLAAILEHSLFSTEQKLLAELNAIMGKKGTRIIIWNLRSYKNATEFDFEKDKYDIRIPEDYKKQEIAPESDYSLRAYCSILYLKPRMQIIIRGQKVKTQLVSKSLAYIERDVYRPKFLTRTVRITFGFNCRNKDHYGIMMYHKNRLIKAYEKVGCQNMGVGVVGIIECNFLKPTHNKQDFDYTNEYRLTILALGEKLNDYWNEMKKRPDQTWVQCDACLKWRKLPDGIDQLPEKWYCSNNPDPQFRNCEVPEEPEDE 455
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217      |236 ||    250       260       270       280       290       300       310       320       330  ||   344       354       364       374       384 ||    411       421       431       441       451    
                                                                                                                                                                                                                                                  224| 238|                                                                                       333|                                             386|                                                   
                                                                                                                                                                                                                                                   234  243                                                                                        338                                              404                                                   


Chain B from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh.....hhhhhhhhhhhhhhh......eeeeeeeee..eeeeeeee.....hhhhhhhhh....................hhhhhhhhhheeeeeeeeee..eeeeeeeehhhhhhh........eeeee....eehhhhhhhhhhhhhhhh...hhhhhhhhhhh....eeeeeeeeee.ee..ee.........................hhhhhhhhhhhhhh......eeee..ee.........eeeeeeeee........eeeeeeee.......eeeeee..eeeeeee..hhhhhh......eeeeee...............hhhhhhhhhhhhhhhhhhhhhh.....eeeee......eeee...........hhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ix1 B   8 GIRLSALCPKFLHTNSTSHTWPFSAVAELIDNAYDPDVNAKQIWIDKTVISDHICLTFTDNGNGMTADKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAMVFTKNGETMSVGFLSQTYLEVIKAEHVVVPIVTFNKHRQMINLTESKASLAAILEHSLFSTEQKLLAELNAIMGKKGTRIIIWNLRSYKNATEFDFEKDKYDIRIPEDYKKQERQIAPESDYSLRAYCSILYLKPRMQIIIRGQKVKTQLVSKSLAYIERDVYRPKFLTRTVRITFGFNCRNKDHYGIMMYHKNRLIKAYEKVGCQLKANNMGVGVVGIIECNFLKPTHNKQDFDYTNEYRLTILALGEKLNDYWNEMKKRPDQTWVQCDACLKWRKLPDGIDQLPEKWYCSNNPDPQFRNCEVPEEPED 454
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217      |236  ||   248       258       268       278       288       298       308       318       328       338       348       358       368       378       405       415       425       435       445         
                                                                                                                                                                                                                                                  224|  239|                                                                                                                                             386|                                                  
                                                                                                                                                                                                                                                   234   242                                                                                                                                              404                                                  


Chain P from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ..eeee... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5ix1 P   1 ARTkQTARK   9
                               |     
                               4-M3L 


Chain Q from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author ..eeee.... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 5ix1 Q   1 ARTkQTARKS  10
                               |    10
                               4-M3L
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IX1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IX1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IX1)

(-) Gene Ontology  (36, 38)

Asymmetric/Biological Unit(hide GO term definitions)

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  MORC3_MOUSE | F7BJB9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H31_MOUSE | P68433: 1cs9 1ct6 1guw 1q3l 1u35 2v83 2w5z 2wp1 2xl3 4ezh 5b1l 5b1m 5ix2
        MORC3_MOUSE | F7BJB9: 5ix2

(-) Related Entries Specified in the PDB File

5ix2