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(-) Description

Title :  CRYSTAL STRUCTURE OF RNA EDITING FACTOR OF DESIGNER PLS-TYPE PPR/9R PROTEIN IN COMPLEX WITH MORF9/RIP9
 
Authors :  J. Yan, Q. Zhang, Z. Guan, T. Zou, P. Yin
Date :  23 Mar 16  (Deposition) - 29 Mar 17  (Release) - 29 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Pentatricopeptide Repeat, Complex, Morf, Pls-Type, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Yan, Q. Zhang, Z. Guan, T. Zou, P. Yin
Structural Basis For Designer Pentatricopeptide Repeat Proteins Interaction With Morf Protein
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MULTIPLE ORGANELLAR RNA EDITING FACTOR 9, CHLOROPLASTIC
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 75-196
    Gene: MORF9, RIP9, AT1G11430, T23J18.10
    Mutation: YES
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: RNA EDITING-INTERACTING PROTEIN 9
 
Molecule 2 - PLS9-PPR
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IWW)

(-) Sites  (0, 0)

(no "Site" information available for 5IWW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IWW)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:99 -Pro A:100
2Asp B:99 -Pro B:100
3Asp C:99 -Pro C:100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IWW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IWW)

(-) Exons   (0, 0)

(no "Exon" information available for 5IWW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhheeeeee...eeeeee.hhhhhhhhh....eeeeee.............eeee..eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5iww A  79 TIMLPGSDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPST 188
                                    88        98       108       118       128       138       148       158       168       178       188


Chain B from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhheeeee.....eeee..hhhhhhh......eeeeee.............eeee..eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5iww B  79 TIMLPGSDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPST 188
                                    88        98       108       118       128       138       148       158       168       178       188


Chain C from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhheeeee.....eeeee.hhhhhhhhh....eeeeee.............eee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 5iww C  80 IMLPGSDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPS 187
                                    89        99       109       119       129       139       149       159       169       179        


Chain D from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5iww D  15 PTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDEFTFSSVLKACARLGALELGKQIHGYVIKSGFEGNVVVYNALIDMYSKCGLLEEARKVFDEMPEKDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDEFTFSSVLKACARLGALELGKQIHGYVIKSGFESNVVVYNALIDMYSKCGLLEEARKVFDEMPEKDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDEFTFSSVLKACARLGALELGKQIHGYVIKSGFESNVVVYNALIDMYSKCGLLEEARKVFDE 314
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IWW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IWW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IWW)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:99 - Pro A:100   [ RasMol ]  
    Asp B:99 - Pro B:100   [ RasMol ]  
    Asp C:99 - Pro C:100   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MORF9_ARATH | Q9LPZ1: 5gi0 5iwb 5mpy

(-) Related Entries Specified in the PDB File

5iw8