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(-) Description

Title :  STRUCTURE OF ORF49 FROM KSHV
 
Authors :  K. Hew, P. Nordlund
Date :  10 Mar 16  (Deposition) - 16 Nov 16  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Orf49, Kshv, Herpesvirus, Lytic Replication, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Hew, S. Veerappan, D. Sim, T. Cornvik, P. Nordlund, S. L. Dahlroth
Structure Of The Open Reading Frame 49 Protein Encoded By Kaposi'S Sarcoma-Associated Herpesvirus.
J. Virol. V. 91 2017
PubMed-ID: 27807232  |  Reference-DOI: 10.1128/JVI.01947-16

(-) Compounds

Molecule 1 - ORF49 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ORF49
    Organism Common: HHV-8
    Organism Scientific: HUMAN HERPESVIRUS 8
    Organism Taxid: 37296

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:270 , ARG A:273binding site for residue SO4 A 401
2AC2SOFTWAREHIS A:43 , ARG A:160 , ARG A:164 , HOH A:509binding site for residue SO4 A 402
3AC3SOFTWARELYS A:186 , HIS A:293 , HIS A:296binding site for residue SO4 A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IPX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IPX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IPX)

(-) Exons   (0, 0)

(no "Exon" information available for 5IPX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhheee.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhh.....hhhhhhhhhhhhh......eehhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ipx A  10 HLFNHLFRYHYPSWDQILQELDTLSVATLNPDCHVPALNVEKTLYLAKTIQILVQHRQSEPYLVPAARANLAYSLQQLYKLGNDKIRGVINGMLPLVDAGCIGFERELIKGLPRVLTLQYPHTAPCTEWCLSHFVGASGRLRSEVRDILTTHNGTCAPSFEWMASVVKKFFLVETVIYEDFQDTDFNVQLNLCFFWTAVVQMYQRCIYEQKLVHIISTSLTLLKSTARSFFAWYDLYRPNLGSAALVKYTEHLIRALTPDCSDVELGELCSHLHHCKHALFS 300
                                    19        29        39        49        59        69        79        89        99       109       119       129    || 148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298  
                                                                                                                                                      134|                                                                                                                                                            
                                                                                                                                                       144
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IPX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IPX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IPX)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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