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(-) Description

Title :  OLIGOPEPTIDE-BINDING PROTEIN OPPA
 
Authors :  H. H. Lee, H. J. Kim, H. J. Yoon
Date :  10 Mar 16  (Deposition) - 15 Mar 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Oligopeptide-Binding Protein, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Yoon, H. J. Kim, B. Mikami, Y. G. Yu, H. H. Lee
Crystal Structure Of A Putative Oligopeptide-Binding Periplasmic Protein From A Hyperthermophile
Extremophiles V. 20 723 2016
PubMed-ID: 27377296  |  Reference-DOI: 10.1007/S00792-016-0861-7

(-) Compounds

Molecule 1 - OLIGOPEPTIDE ABC TRANSPORTER, PERIPLASMIC OLIGOPEPTIDE- BINDING PROTEIN, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 31-659
    Gene: TM_0056
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IPW)

(-) Sites  (0, 0)

(no "Site" information available for 5IPW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IPW)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Leu A:297 -Pro A:298
2Asn A:406 -Gly A:407
3Leu A:408 -Ala A:409
4Gln A:413 -Ala A:414
5Arg A:561 -Gly A:562
6Thr A:646 -Pro A:647

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IPW)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5IPW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:633
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhh........hhhhhhhhhh....hhhhhh....eeee..........eeeeee.hhhhhhhhhhhhh...eee......eee..eeeeeee....eeeeee............hhhhhhhhhhhh..........hhhhhh.eeeeeee..eeeeee...hhhhhhh.........hhhhhhhhh....hhhhhhh........hhhhhhhhhh.............eee.......eeeeee.....eee..........eeeeee..hhhhhhhhhhh....ee..hhhhhh.hhhhhhhhhhhhhhhheeee..ee...eeeeeee.....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..................hhhhhhh....hhhhhhhhhhhhh..................eeeeee.hhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh...eeeeee....hhhhh............hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eee.......eeee..ee......ee......hhhhhhhhhee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ipw A  27 GAMGATPEEYYKATGKKITEYHESPMLTKLVEEGKLPPVEQRLPEEPLVVQPVEKVGQFGGTWRRVWKGPSDRWGISKLIEVKLAFWDKEGGKLVPGLAKSWEVLENGRVYIFHLRKGVKWSDGAPYTAHDIVFWVNDIVGNDDITPSKPDWYNIGVKVEALDDYTVKFEFSKPYGLFLLKVPYGGFTGAPAHYLKQFHPKYTPMEEIEKKMVEGVHNTWVDLFNDKNDFLENTELPTLSPWKPITDPTEQFYILERNPYFWAVDIEGNQLPYIDYVRHEYVKNDEVILLKAISGEIDMQWRHIGGLGAGAGNFTLLMENSQSGGYRVLKWIAANGSASRISLNYAHSDEVLRKVFNDVRFRQALSLAINREEINEILFNGLAEPRQASLVSGSPYFDPEWEKAYAEYDPDRANKLLDEMGLKWDDKHEYRLLPDGRPLRFTITVTGQFHVDVWTMVKEYWKQIGVWVEIENLERSLFYERADAGDFDAMVWNMDRAAQPLSSPMVIFPGSENIADFWYIGWSGWISYYIDKNIRGVEPEEVPEGPEPPEVVYRLVDLYYQIASTPDPDKIKELMAEATKIHRENLWMIGTVGEDLSPAIAKNNFRNVPEFLVTDDVLRTPLNAMPMQFFIEQ 659
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IPW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IPW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IPW)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:561 - Gly A:562   [ RasMol ]  
    Asn A:406 - Gly A:407   [ RasMol ]  
    Gln A:413 - Ala A:414   [ RasMol ]  
    Leu A:297 - Pro A:298   [ RasMol ]  
    Leu A:408 - Ala A:409   [ RasMol ]  
    Thr A:646 - Pro A:647   [ RasMol ]  
 

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