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(-) Description

Title :  X-RAY STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN
 
Authors :  A. Ruf, J. Benz, D. Burger, B. D'Arcy, M. Debulpaep, P. Di Lello, D. Fry, T. Kremer, T. Laeremans, H. Matile, A. Ross, M. G. Rudolph, A. C. Rufer, M. O. Steinmetz, J. Steyaert, G. Schoch, M. Stihle, R. Thoma
Date :  09 Mar 16  (Deposition) - 18 May 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym. Unit :  A,B,D,E
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Dcx Domain, Ubiquitin-Like Fold, Microtubule Associated, Signaling Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Burger, M. Stihle, A. Sharma, P. Di Lello, J. Benz, B. D'Arcy, M. Debulpaep, D. Fry, W. Huber, T. Kremer, T. Laeremans, H. Matile, A. Ross, A. C. Rufer, G. Schoch, M. O. Steinmetz, J. Steyaert, M. G. Rudolph, R. Thoma, A. Ruf
Crystal Structures Of The Human Doublecortin C- And N-Terminal Domains In Complex With Specific Antibodies.
J. Biol. Chem. V. 291 16292 2016
PubMed-ID: 27226599  |  Reference-DOI: 10.1074/JBC.M116.726547

(-) Compounds

Molecule 1 - XA4551 NANOBODY AGAINST C-DCX
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844
 
Molecule 2 - NEURONAL MIGRATION PROTEIN DOUBLECORTIN
    Chains: D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL DOMAIN, UNP RESIDUES 251-341
    Gene: DCX, DBCN, LISX
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DOUBLIN,LISSENCEPHALIN-X,LIS-X

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABDE
Biological Unit 1 (1x): A  E
Biological Unit 2 (1x):  BD 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IP4)

(-) Sites  (0, 0)

(no "Site" information available for 5IP4)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:24 -A:96
2B:24 -B:96

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IP4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IP4)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5IP4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeeeeee.........eeeeee......eeeeee....eee.......eeeeeehhh.eeeeee...hhhhheeeeeee...ee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5ip4 A   4 VQLQESGGGLVQAGGSLRLSCTASVNIIGGNHWAWYRQAPGQQRDLVASLSRYNANYADSVKGRFTISRDNAKNAAYLQMNSLKPEDTAIYFCALENYYWGQGTQVTVS 112
                                    13        23        33        43        53        63        73        83        93       103         


Chain B from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeeeeee.........eeeeee.....eeeeeee....eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee...ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5ip4 B   4 VQLQESGGGLVQAGGSLRLSCTASVNIIGGNHWAWYRQAPGQQRDLVASLSRYNANYADSVKGRFTISRDNAKNAAYLQMNSLKPEDTAIYFCALENYYWGQGTQVTVSS 113
                                    13        23        33        43        53        63        73        83        93       103       113


Chain D from PDB  Type:PROTEIN  Length:80
                                                                                                                
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee......eeeeee......hhhhhhhhhhhhh.........eee....ee.hhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 5ip4 D 255 KDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACG 334
                                   264       274       284       294       304       314       324       334


Chain E from PDB  Type:PROTEIN  Length:84
                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeee.......eeeeee......hhhhhhhhhhhhhh.......eeee.......hhhhh.....eeeeehhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 5ip4 E 255 KDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKF 338
                                   264       274       284       294       304       314       324       334
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IP4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IP4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IP4)

(-) Gene Ontology  (31, 31)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCX_HUMAN | O43602: 1mjd 2bqq 2xrp 4atu 5ikc 5in7 5io9 5ioi

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