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(-) Description

Title :  TOBACCO 5-EPI-ARISTOLOCHENE SYNTHASE WITH CAPSO BUFFER MOLECULE AND CA2+ IONS
 
Authors :  H. J. Koo, G. V. Louie, Y. Xu, M. Bowman, J. P. Noel
Date :  04 Mar 16  (Deposition) - 08 Mar 17  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Terpene Synthase, Teas, Capso, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Koo, G. V. Louie, Y. Xu, M. Bowman, J. P. Noel
Small-Molecule Buffer Components Can Directly Affect Terpene-Synthase Activity By Interacting With The Substrate-Binding Site Of The Enzyme
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5-EPI-ARISTOLOCHENE SYNTHASE
    Chains: A
    EC Number: 4.2.3.61
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PH9GW
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: EAS3, EAS4
    Organism Common: COMMON TOBACCO
    Organism Scientific: NICOTIANA TABACUM
    Organism Taxid: 4097
    Synonym: EAS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
13CX1Ligand/Ion(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONICACID
23FX1Ligand/Ion(2R)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONICACID
3CA2Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:444 , THR A:448 , GLU A:452 , 3FX A:603 , 3CX A:604binding site for residue CA A 601
2AC2SOFTWAREASP A:301 , ASP A:305 , 3FX A:603 , 3CX A:604 , HOH A:703 , HOH A:722binding site for residue CA A 602
3AC3SOFTWARETRP A:273 , SER A:298 , THR A:401 , THR A:402 , ARG A:441 , ASP A:444 , TYR A:520 , TYR A:527 , CA A:601 , CA A:602 , 3CX A:604 , HOH A:703 , HOH A:716binding site for residue 3FX A 603
4AC4SOFTWARETRP A:273 , ILE A:297 , SER A:298 , THR A:401 , THR A:403 , ARG A:441 , ASP A:444 , TYR A:520 , TYR A:527 , CA A:601 , CA A:602 , 3FX A:603 , HOH A:703binding site for residue 3CX A 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ILH)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:184 -Pro A:185
2Arg A:497 -Pro A:498

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ILH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ILH)

(-) Exons   (0, 0)

(no "Exon" information available for 5ILH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:536
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ilh A  13 IVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ILH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ILH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ILH)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  5ilh
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  5EAS_TOBAC | Q40577
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  4.2.3.61
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        5EAS_TOBAC | Q40577: 1hx9 1hxa 1hxc 1hxg 3lz9 3m00 3m01 3m02 4di5 4rnq 5dhi 5dhk 5eas 5eat 5eau 5ik0 5ik6 5ik9 5ika 5ikh 5il3 5il8 5ild 5ili 5ilj 5ilk 5ily 5ilz 5im1

(-) Related Entries Specified in the PDB File

5ik0 5ik6 5ik9 5ika 5ikh 5il3 5il8 5ild 5ili 5ilj 5ilk 5ily 5ilz 5im1