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(-) Description

Title :  CRYO EM DENSITY OF MICROTUBULE ASSEMBLED FROM HUMAN TUBB3-D417H MUTANT
 
Authors :  S. C. Ti, M. C. Pamula, S. C. Howes, C. Duellberg, N. I. Cade, R. E. Kleiner T. Surrey, E. Nogales, T. M. Kapoor
Date :  01 Mar 16  (Deposition) - 20 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Human, Microtubules, Mutant Tubulin, Hydrolysis, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Ti, M. C. Pamula, S. C. Howes, C. Duellberg, N. I. Cade, R. E. Kleiner, S. Forth, T. Surrey, E. Nogales, T. M. Kapoor
Mutations In Human Tubulin Proximal To The Kinesin-Binding Site Alter Dynamic Instability At Microtubule Plus- And Minus-Ends.
Dev. Cell V. 37 72 2016
PubMed-ID: 27046833  |  Reference-DOI: 10.1016/J.DEVCEL.2016.03.003

(-) Compounds

Molecule 1 - TUBULIN ALPHA-1B CHAIN
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: TUBA1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1,TUBULIN ALPHA- UBIQUITOUS CHAIN
 
Molecule 2 - TUBULIN BETA-3 CHAIN
    Chains: B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: TUBB3, TUBB4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TUBULIN BETA-4 CHAIN,TUBULIN BETA-III

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2GTP1Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:144 , THR A:145 , ILE A:171 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:502 , LEU B:246 , LYS B:252binding site for residue GTP A 501
2AC2SOFTWAREASP A:69 , GLU A:71 , GTP A:501binding site for residue MG A 502
3AC3SOFTWAREGLN B:11 , CYS B:12 , GLN B:15 , ASN B:99 , SER B:138 , GLY B:141 , GLY B:142 , THR B:143 , ASP B:177 , ASN B:204 , TYR B:222 , ASN B:226binding site for residue GDP B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IJ9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:273 -Pro A:274
2Ala B:271 -Pro B:272

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IJ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IJ9)

(-) Exons   (0, 0)

(no "Exon" information available for 5IJ9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeehhhhhhhhhhhhhhhhhhh..........hhhhh..eee.....eee.eeeee..hhhhhhhhhhhhhhh.....eee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh...eeeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee.....hhhhhh..hhhhhhhhhhhhhhh....hhhhh....eeeeeee..hhhhhhhhhhhhhhh............eeeee.................eeeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ij9 A   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 437
                                    10        20        30      ||47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437
                                                               37|                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                45                                                                                                                                                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhhhhhh...........hhhhhhhhhh.eee.....eee.eeeee.hhhhhhhhhhhhhhhh.hhh.eee.......hhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.ee...hhhhhhhhhh......eeeeeee......hhhhh..hhhhhhhhhhhhhhh............eeeeeeee..hhhhhhhhhhhhhhhh...........eeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ij9 B   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNHLVSEYQQYQ 426
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IJ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IJ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IJ9)

(-) Gene Ontology  (29, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:273 - Pro A:274   [ RasMol ]  
    Ala B:271 - Pro B:272   [ RasMol ]  
 

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  5ij9
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  TBA1B_HUMAN | P68363
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  TBB3_HUMAN | Q13509
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TBA1B_HUMAN | P68363: 2e4h 5ij0
        TBB3_HUMAN | Q13509: 5ij0 5jco

(-) Related Entries Specified in the PDB File

5ij0 RELATED ID: EMD-8094 RELATED DB: EMDB