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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN CAMKII-ALPHA HUB
 
Authors :  E. Mcspadden, Y. M. Cao, M. Bhattacharyya, C. L. Gee, T. Barros, J. Kuriy
Date :  26 Feb 16  (Deposition) - 23 Mar 16  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (2x)
Keywords :  Ca2+/Cam-Dependent Kinase Alpha, Hub, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bhattacharyya, M. M. Stratton, C. C. Going, E. D. Mcspadden, Y. Huang, A. C. Susa, A. Elleman, Y. M. Cao, N. Pappireddi, P. Burkhardt C. L. Gee, T. Barros, H. Schulman, E. R. Williams, J. Kuriyan
Molecular Mechanism Of Activation-Triggered Subunit Exchang In Ca(2+)/Calmodulin-Dependent Protein Kinase Ii.
Elife V. 5 2016
PubMed-ID: 26949248  |  Reference-DOI: 10.7554/ELIFE.13405

(-) Compounds

Molecule 1 - CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II SUBUNIT ALPHA
    Chains: A, B, C, D, E, F
    EC Number: 2.7.11.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 345-475
    Gene: CAMK2A, CAMKA, KIAA0968
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CAMK-II SUBUNIT ALPHA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (2x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IG3)

(-) Sites  (0, 0)

(no "Site" information available for 5IG3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IG3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly C:442 -Ile C:443
2Ser E:470 -Gly E:471

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IG3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IG3)

(-) Exons   (0, 0)

(no "Exon" information available for 5IG3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..hhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeeehhhhh...ee.hhhhhhhhhhhhhhh....eeeeeeeeeee....eeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ig3 A 329 HHHSSGLEVLFQGPHMVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGA 472
                                   338       348       358       368       378       388       398       408       418       428       438       448       458       468    


Chain B from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeehhhhh...ee.hhhhhhhhhh......eeeeeeeeeee....eeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ig3 B 344 MVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGAP 473
                                   353       363       373       383       393       403|      416       426       436       446       456       466       
                                                                                     403|                                                                  
                                                                                      407                                                                  


Chain C from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeee.hhhh..eee.hhhhhhhhhh.......eeeeeeeeeee....eeeeeeeeeeeee.....eeeeeeeeeeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ig3 C 331 HSSGHMVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGA 472
                               ||  348       358       368       378       388       398     ||410       420       430       440       450       460       470  
                             334|                                                          404|                                                                 
                              343                                                           407                                                                 


Chain D from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeeehhhhh...ee.hhhhhhhhhhh..eeeeeeeeeee....eeeeeeeeeeeee.....eeeeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ig3 D 331 HSSMVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGAP 473
                              ||   350       360       370       380       390       400 ||    416       426       436       446       456       466       
                            333|                                                       402|                                                                
                             344                                                        409                                                                


Chain E from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeeehhhhh...ee.hhhhhhhhh....eeeeeeeeeee....eeeeeeeeeeeee.....eeeeeeeeeeeeee....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ig3 E 343 HMVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGAP 473
                                   352       362       372       382       392       402|      418       428       438       448       458       468     
                                                                                     402|                                                                
                                                                                      409                                                                


Chain F from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeeehhhhh...ee.hhhhhh.......eeeeeeeeeee....eeeeeeeeeeeeee...eeeeeeeeeeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ig3 F 344 MVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGA 472
                                   353       363       373       383       393       409       419       429       439       449       459       469   
                                                                                   401|                                                                
                                                                                    408
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IG3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IG3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IG3)

(-) Gene Ontology  (41, 41)

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  Sites
(no "Sites" information available for 5ig3)
 
  Cis Peptide Bonds
    Gly C:442 - Ile C:443   [ RasMol ]  
    Ser E:470 - Gly E:471   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KCC2A_HUMAN | Q9UQM7: 2vz6 3soa

(-) Related Entries Specified in the PDB File

5ig0 5ig1 5ig4 5ig5