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(-) Description

Title :  CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR)FROM BURKHOLDERIA VIETNAMIENSIS AT 1.55 A RESOLUTION
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  24 Feb 16  (Deposition) - 04 May 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ssgcid, Short-Chain Dehydrogenase/Reductase Sdr, Burkholderia Vietnamiensis, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. K. Yano, D. M. Dranow, D. D. Lorimer, T. E. Edwards
Crystal Structure Of A Short-Chain Dehydrogenase/Reductase (Sdr)From Burkholderia Vietnamiensis At 1. 55 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BUVIA.00010.RB1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BCEP1808_3023
    Organism Scientific: BURKHOLDERIA VIETNAMIENSIS (STRAIN G4 / LMG 22486)
    Organism Taxid: 269482
    Strain: G4 / LMG 22486

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IDQ)

(-) Sites  (0, 0)

(no "Site" information available for 5IDQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IDQ)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh..eeee....hhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhh........hhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh..eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5idq A   0 HMKTVLIVGASRGLGREFVRQYRRDGWNVIATARDDASLAALRAAGAHAHALDIAQPEQIAALGWKLDGERLDAAVLVSGVYGPRTEGVETIGNEDFDAVMHTNVRGPMQLLPIVLPLVEDARGVLAVVSSRMGSIADATGTTGWLYRASKAALNDVLRIASLQTRHAACISLHPGWVRAIDPETSVTGMRRVIAEAGADVSRANGRFLQYDGVELSW 225
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       187       197       207       217        
                                                                                                                                                                                                            178|                                      
                                                                                                                                                                                                             187                                      


Chain B from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh..eeee....hhhhhhhhhhhh......eeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh........hhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhhh..eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5idq B   1 MKTVLIVGASRGLGREFVRQYRRDGWNVIATARDDASLAALRAAGAHAHALDIAQPEQIAALGWKLDGERLDAAVLVSGVYGPRTEGVETIGNEDFDAVMHTNVRGPMQLLPIVLPLVEDARGVLAVVSSRMGSIADATGTTGWLYRASKAALNDVLRIASLQTRHAACISLHPGWVAIDPETSVTGMRRVIAEAGADVSRANGRFLQYDGVELSW 225
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      |189       199       209       219      
                                                                                                                                                                                                          177|                                      
                                                                                                                                                                                                           187
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IDQ)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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        A4JIB1_BURVG | A4JIB1: 5idw

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