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(-) Description

Title :  ECOLI GLOBAL DOMAIN 245-586
 
Authors :  C. Dong, H. Dong
Date :  15 Feb 16  (Deposition) - 17 Aug 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Ecoli 245-586, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Dong, Z. Zhang, X. Tang, S. Huang, H. Li, B. Peng, C. Dong
Structural Insights Into Cardiolipin Transfer From The Inne Membrane To The Outer Membrane By Pbga In Gram-Negative Bacteria.
Sci Rep V. 6 30815 2016
PubMed-ID: 27487745  |  Reference-DOI: 10.1038/SREP30815

(-) Compounds

Molecule 1 - INNER MEMBRANE PROTEIN YEJM
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: YEJM, YEJN, B2188, JW2176
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I5H)

(-) Sites  (0, 0)

(no "Site" information available for 5I5H)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I5H)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Met A:364 -Pro A:365
2Glu A:566 -Lys A:567
3Lys A:567 -Pro A:568
4Pro A:568 -Gln A:569
5Ser A:571 -Leu A:572

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I5H)

(-) Exons   (0, 0)

(no "Exon" information available for 5I5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeeeee...hhhhhhhhhhhhhhh.eee..ee....hhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhh..eeeeee.....hhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee...hhhhhh...hhhhhh..eeee......eee...eehhhhhhhhhhhh.....hhhhh...............eeee...eeeee...eeeeee....eeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i5h A 246 YPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDEKPQLSL 572
                                   255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I5H)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Glu A:566 - Lys A:567   [ RasMol ]  
    Lys A:567 - Pro A:568   [ RasMol ]  
    Met A:364 - Pro A:365   [ RasMol ]  
    Pro A:568 - Gln A:569   [ RasMol ]  
    Ser A:571 - Leu A:572   [ RasMol ]  
 

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  5i5h
    Family and Domain Information: ProDom | SYSTERS
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    Orientation in Membranes: OPM
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  YEJM_ECOLI | P0AD27
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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