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(-) Description

Title :  IMMATURE HEXAGONAL LATTICE OF HIV-1 GAG
 
Authors :  O. Pornillos, J. M. Wagner, K. Zadrozny, B. K. Ganser-Pornillos
Date :  12 Feb 16  (Deposition) - 27 Jul 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.27
Chains :  Asym./Biol. Unit :  G,H,I,J,K,L
Keywords :  Capsid, Immature Hexagonal Lattice, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Wagner, K. K. Zadrozny, J. Chrustowicz, M. D. Purdy, M. Yeager, B. K. Ganser-Pornillos, O. Pornillos
Crystal Structure Of An Hiv Assembly And Maturation Switch.
Elife V. 5 2016
PubMed-ID: 27416583  |  Reference-DOI: 10.7554/ELIFE.17063

(-) Compounds

Molecule 1 - CTD-SP1 FRAGMENT OF HIV-1 GAG
    Chains: G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: GAG
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I4T)

(-) Sites  (0, 0)

(no "Site" information available for 5I4T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I4T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5I4T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I4T)

(-) Exons   (0, 0)

(no "Exon" information available for 5I4T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain G from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5i4t G 148 TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQV 238
                                   157       167       177       187       197       207       217       227       237 


Chain H from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5i4t H 148 TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQV 238
                                   157       167       177       187       197       207       217       227       237 


Chain I from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5i4t I 148 TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQV 238
                                   157       167       177       187       197       207       217       227       237 


Chain J from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5i4t J 148 TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQV 238
                                   157       167       177       187       197       207       217       227       237 


Chain K from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5i4t K 148 TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQV 238
                                   157       167       177       187       197       207       217       227       237 


Chain L from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5i4t L 148 TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQV 238
                                   157       167       177       187       197       207       217       227       237
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I4T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I4T)

(-) Gene Ontology  (15, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Ligands, Modified Residues, Ions" information available for 5i4t)
 
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(no "Sites" information available for 5i4t)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5i4t)
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q72497_9HIV1 | Q72497: 1m9d 2buo 2jmg 2lf4 2nv3 3dph 3ds0 3ds1 3ds2 3ds3 3ds4 3ds5 3dtj 3p05 4dga 4dge
UniProtKB/TrEMBL
        Q72497_9HIV1 | Q72497: 1l6n 1m9c 1m9e 1m9f 1m9x 1m9y 3obu 3obx 3p0a 5mcz 5md0 5md1 5md2 5md3 5md4 5md5 5md6 5md7 5md8 5md9 5mda 5mdb 5mdc 5mdd 5mde 5mdf 5mdg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5I4T)