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(-) Description

Title :  CRYSTAL STRUCTURE OF AMIDASE, HYDANTOINASE/CARBAMOYLASE FAMILY FROM BURKHOLDERIA VIETNAMIENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  12 Feb 16  (Deposition) - 02 Mar 16  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ssgcid, Amidase, Hydantoinase/Carbamoylase Family, Burkholderia Thailandensis, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Abendroth, P. S. Horanyi, D. D. Lorimer, T. E. Edwards
Crystal Structure Of Amidase, Hydantoinase/Carbamoylase Family From Burkholderia Vietnamiensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMIDASE, HYDANTOINASE/CARBAMOYLASE FAMILY
    Chains: A, B
    EC Number: 3.5.1.87
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BUVIA.12245.B.B1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BUVIA.12245.B.B2
    Gene: BCEP1808_5509
    Organism Scientific: BURKHOLDERIA VIETNAMIENSIS (STRAIN G4 / LMG 22486)
    Organism Taxid: 269482
    Strain: G4 / LMG 22486

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
13PG2Ligand/Ion3-PHOSPHOGLYCERIC ACID
2OCS2Mod. Amino AcidCYSTEINESULFONIC ACID
3ZN4Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:96 , ASP A:107 , HIS A:203 , 3PG A:503 , HOH A:792binding site for residue ZN A 501
2AC2SOFTWAREASP A:107 , GLU A:142 , HIS A:395 , 3PG A:503binding site for residue ZN A 502
3AC3SOFTWAREHIS A:96 , ASP A:107 , GLU A:141 , GLU A:142 , MET A:150 , HIS A:203 , GLN A:206 , GLN A:226 , ARG A:301 , ALA A:369 , GLY A:370 , HIS A:371 , HIS A:395 , ZN A:501 , ZN A:502 , HOH A:792 , HIS B:239 , ASN B:288binding site for residue 3PG A 503
4AC4SOFTWAREHIS B:96 , ASP B:107 , HIS B:203 , 3PG B:503 , HOH B:657binding site for residue ZN B 501
5AC5SOFTWAREASP B:107 , GLU B:142 , HIS B:395 , 3PG B:503binding site for residue ZN B 502
6AC6SOFTWAREHIS A:239 , ASN A:288 , HIS B:96 , ASP B:107 , GLU B:141 , GLU B:142 , ALA B:149 , MET B:150 , HIS B:203 , GLN B:206 , GLN B:226 , ARG B:301 , ALA B:369 , GLY B:370 , HIS B:371 , HIS B:395 , ZN B:501 , ZN B:502 , HOH B:657binding site for residue 3PG B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I4M)

(-) Cis Peptide Bonds  (6, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:147 -Pro A:148
2Ala A:270 -Pro A:271
3His A:283 -Pro A:284
4Ala B:147 -Pro B:148
5Ala B:270 -Pro B:271
6His B:283 -Pro B:284

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I4M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I4M)

(-) Exons   (0, 0)

(no "Exon" information available for 5I4M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhh..eeee.....eeeee.........eeeee............hhhhhhhhhhhhhhhhhh.......eeeee............hhhhhhhh...hhhhhhhh......hhhhhhhhh..............eeeeeee...hhhhhh...eeeeeee.eeeeeeeeee...ee....hhhhh.hhhhhhhhhhhhhhhhhhhh....eee...eeee.....ee..eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee..ee.hhhhhhhhhhhhhhh...eeeeee...hhhhhhh....eeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5i4m A  12 ALDTSIKVDGRRLWDSLMEVAKIGATPKGGVCRLALTDLDKAARDLIVGWAKAAGCTVTVDTMGNVFMRRAGRVADAAPVVTGSHADSQPTGGRFDGIYGVLGGLEVIRSLNDHGIETEHPVEVVIWTNEEGSRFAPAMVASGVFAGVFPLEYGLSRKDVDGKTIGEELARIGYAGDAPCGGRKLHAAFELHIEQGPILEAEcKTIGVVTDAQGQRWYEITFTGQEAHAGPTPMPRRRDALLGASRVVDLVNRIGLDHAPYGCATVGMMQVHPNSRNVIPGRVFFTVDFRHPDDAVLAKMDAALRDGVARIAADIGLDTALEQIFYYAPIAFDSACVAAVRAAADRFGYSHRDIVSGAGHDACYLAQVAPTSMVFVPCIDGISHNEIEDATPAWIEAGANVLLHAMLSRACEPV 425
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  |    221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421    
                                                                                                                                                                                                                                    214-OCS                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhh..eeee.....eeeee.........eeeee............hhhhhhhhhhhhhhhhhh.......eeeee............hhhhhhhh...hhhhhhhh......hhhhhhhhh..............eeeeeee...hhhhhh...eeeeeee.eeeeeeeeee...ee....hhhhh.hhhhhhhhhhhhhhhhhhhh....eee...eeee.....ee..eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee..ee.hhhhhhhhhhhhhhh...eeeeee...hhhhhhh....eeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i4m B  13 LDTSIKVDGRRLWDSLMEVAKIGATPKGGVCRLALTDLDKAARDLIVGWAKAAGCTVTVDTMGNVFMRRAGRVADAAPVVTGSHADSQPTGGRFDGIYGVLGGLEVIRSLNDHGIETEHPVEVVIWTNEEGSRFAPAMVASGVFAGVFPLEYGLSRKDVDGKTIGEELARIGYAGDAPCGGRKLHAAFELHIEQGPILEAEcKTIGVVTDAQGQRWYEITFTGQEAHAGPTPMPRRRDALLGASRVVDLVNRIGLDHAPYGCATVGMMQVHPNSRNVIPGRVFFTVDFRHPDDAVLAKMDAALRDGVARIAADIGLDTALEQIFYYAPIAFDSACVAAVRAAADRFGYSHRDIVSGAGHDACYLAQVAPTSMVFVPCIDGISHNEIEDATPAWIEAGANVLLHAMLSRACEPV 425
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 |     222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422   
                                                                                                                                                                                                                                   214-OCS
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I4M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I4M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I4M)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Ala B:270 - Pro B:271   [ RasMol ]  
    His A:283 - Pro A:284   [ RasMol ]  
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