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(-) Description

Title :  STRUCTURE OF RACA-DNA COMPLEX; P21 FORM
 
Authors :  M. A. Schumacher
Date :  11 Feb 16  (Deposition) - 04 May 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.62
Chains :  Asym. Unit :  A,B,D,E,F,G,H,I,J,K,P,R,T,U,W,Z
Biol. Unit 1:  A,B,D,E,U,W  (1x)
Biol. Unit 2:  F,G,I,P,R  (1x)
Biol. Unit 3:  H,J,K,T,Z  (1x)
Biol. Unit 4:  A (1x),B (1x),D (1x),E (1x),F (1x),G (1x),H (1x),I (1x),J (1x),K (1x),P (1x),R (1x),T (1x),U (1x),W (1x),Z (1x)
Keywords :  Raca, B. Subtilis, Axial Filament, Sporulation, Dna Segregation, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, J. Lee, W. Zeng
Molecular Insights Into Dna Binding And Anchoring By The Bacillus Subtilis Sporulation Kinetochore-Like Raca Protein
Nucleic Acids Res. V. 44 5438 2016
PubMed-ID: 27085804  |  Reference-DOI: 10.1093/NAR/GKW248

(-) Compounds

Molecule 1 - CHROMOSOME-ANCHORING PROTEIN RACA
    Chains: B, A, D, E, G, F, H, I, J, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RACA, YWKC, BSU37030
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168
 
Molecule 2 - DNA (5'-D(*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*CP*A)-3')
    Chains: U, T, Z, R, P, W
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABDEFGHIJKPRTUWZ
Biological Unit 1 (1x): ABDE         UW 
Biological Unit 2 (1x):     FG I  PR    
Biological Unit 3 (1x):       H JK  T  Z
Biological Unit 4 (1x): A (1x)B (1x)D (1x)E (1x)F (1x)G (1x)H (1x)I (1x)J (1x)K (1x)P (1x)R (1x)T (1x)U (1x)W (1x)Z (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I44)

(-) Sites  (0, 0)

(no "Site" information available for 5I44)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I44)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5I44)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I44)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I44)

(-) Exons   (0, 0)

(no "Exon" information available for 5I44)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhhhhh.hhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  5i44 A  2 GSHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHL 68
                                    11        21        31        41        51        61       


Chain B from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhhhhhh.hhhhhhhhhhhhh...ee.....eeeehhhhhhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  5i44 B  2 GSHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHLP 69
                                    11        21        31        41        51        61        


Chain D from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhhhhhh.hhhhhhhhhhhh....ee.....eeeehhhhhhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  5i44 D  2 GSHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHL 68
                                    11        21        31        41        51        61       


Chain E from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.hhhhhhhhhhhh....ee.....ee.hhhhhhhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  5i44 E  2 GSHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHLP 69
                                    11        21        31        41        51        61        


Chain F from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..hhhhhhhhhhhh....ee.....ee.hhhhhhhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  5i44 F  2 GSHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHLP 69
                                    11        21        31        41        51        61        


Chain G from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhh.hhhhhhhhhhhh....ee.....eeehhhhhhhhhhhhhhhhh..hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  5i44 G  1 SHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHLPK 68
                                    10        20        30        40        50        60        


Chain H from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh..hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  5i44 H  1 MNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHL 64
                                    10        20        30        40        50        60    


Chain I from PDB  Type:PROTEIN  Length:65
                                                                                                
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhhh....ee.....ee...hhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                  5i44 I  1 MNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHLP 65
                                    10        20        30        40        50        60     


Chain J from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhhhhh.hhhhhhhhhhhh....ee.....eeehhhhhhhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  5i44 J  2 GSHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHL 68
                                    11        21        31        41        51        61       


Chain K from PDB  Type:PROTEIN  Length:66
                                                                                                 
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eehhhhhhhhh.hhhhhhhhhhhhh...ee.....eeehhhhhhhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  5i44 K  1 SHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHL 66
                                    10        20        30        40        50        60      


Chain P from PDB  Type:DNA  Length:14
                                             
                  5i44 P  1 TGACGCCGGCGTCA 14
                                    10    


Chain R from PDB  Type:DNA  Length:14
                                             
                  5i44 R  1 TGACGCCGGCGTCA 14
                                    10    


Chain T from PDB  Type:DNA  Length:14
                                             
                  5i44 T  1 TGACGCCGGCGTCA 14
                                    10    


Chain U from PDB  Type:DNA  Length:14
                                             
                  5i44 U  1 TGACGCCGGCGTCA 14
                                    10    


Chain W from PDB  Type:DNA  Length:14
                                             
                  5i44 W  1 TGACGCCGGCGTCA 14
                                    10    


Chain Z from PDB  Type:DNA  Length:14
                                             
                  5i44 Z  1 TGACGCCGGCGTCA 14
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I44)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I44)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I44)

(-) Gene Ontology  (11, 11)

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5i41