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(-) Description

Title :  PREFUSION FORM OF THE VESICULAR STOMATITIS VIRUS GLYCOPROTEIN G ECTODOMAIN
 
Authors :  S. Roche, S. Bressanelli
Date :  09 Feb 16  (Deposition) - 02 Mar 16  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Virion Protein, Membrane Protein, Envelope Protein, Membrane Fusion, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Roche, F. A. Rey, Y. Gaudin, S. Bressanelli
Structure Of The Prefusion Form Of The Vesicular Stomatitis Virus Glycoprotein G.
Science V. 315 843 2007
PubMed-ID: 17289996  |  Reference-DOI: 10.1126/SCIENCE.1135710

(-) Compounds

Molecule 1 - GLYCOPROTEIN G
    Chains: A
    Organism Common: VSIV
    Organism Scientific: VESICULAR STOMATITIS INDIANA VIRUS (STRAIN MUDD-SUMMERS)
    Organism Taxid: 11279
    Strain: MUDD-SUMMERS

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
2YB2Ligand/IonYTTERBIUM (III) ION
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
2YB-1Ligand/IonYTTERBIUM (III) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:286binding site for residue YB A 504
2AC2SOFTWAREGLU A:191binding site for residue YB A 505
3AC3SOFTWAREASN A:163binding site for Poly-Saccharide residues NAG A 501 through NAG A 502 bound to ASN A 163
4AC4SOFTWAREASN A:320binding site for Mono-Saccharide NAG A 503 bound to ASN A 320

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:24 -A:284
2A:59 -A:92
3A:68 -A:114
4A:153 -A:158
5A:177 -A:224
6A:219 -A:253

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5I2S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I2S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I2S)

(-) Exons   (0, 0)

(no "Exon" information available for 5I2S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee....................eeeeeeeee.......ee.eeeeeeeeeeeeeee.....eeeeeeeeee..hhhhhhhhhhhhhh..................eeeeeeeeeeee..eee......ee...hhh.ee...eee......eeee............eeeeeeeee...hhhhh.....eee............eeeee..eeeee.....eeee.hhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh......eeeeeeeee..eeeeeeeeeeeeee...ee...eeee.....eee.....eee..eee.hhh.eee..eeehhhhhh.....hhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i2s A   1 KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTALQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITHSIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPTVHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMADKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIINGTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHPHIQDA 413
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 2J6J: 1,1)

(no "SCOP Domain" information available for 5I2S, only for superseded entry 2J6J replaced by 5I2S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I2S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I2S)

(-) Gene Ontology  (12, 12)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VGLG_VSIVM | P0C2X0: 5i2m

(-) Related Entries Specified in the PDB File

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