Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF MTSNF2
 
Authors :  Z. C. Chen, X. Xia
Date :  02 Feb 16  (Deposition) - 20 Jul 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym./Biol. Unit :  A
Keywords :  Swi2/Snf2, Chromatin Remodeling, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Xia, X. Liu, T. Li, X. Fang, Z. C. Chen
Structure Of Chromatin Remodeler Swi2/Snf2 In The Resting State
Nat. Struct. Mol. Biol. V. 23 722 2016
PubMed-ID: 27399259  |  Reference-DOI: 10.1038/NSMB.3259

(-) Compounds

Molecule 1 - SNF2-FAMILY ATP DEPENDENT CHROMATIN REMODELING FACTOR LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 445-1176
    Gene: MYCTH_115909
    Organism Scientific: MYCELIOPHTHORA THERMOPHILA ATCC 42464
    Organism Taxid: 573729
    Strain: ATCC 42464
    Synonym: MTSNF2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1KH24Ligand/Ion3-(1-METHYLPIPERIDINIUM-1-YL)PROPANE-1-SULFONATE
2NA1Ligand/IonSODIUM ION
3SO43Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:601 , ASN A:865 , ASP A:866 , ARG A:870 , TYR A:1090 , VAL A:1099 , KH2 A:1202 , HOH A:1308binding site for residue KH2 A 1201
2AC2SOFTWARETYR A:569 , ASN A:570 , GLN A:602 , GLN A:857 , MET A:858 , ASN A:865 , KH2 A:1201 , HOH A:1303 , HOH A:1307 , HOH A:1308binding site for residue KH2 A 1202
3AC3SOFTWAREGLU A:761 , ILE A:764 , LEU A:765 , ARG A:768 , ARG A:769 , LYS A:772 , ARG A:775 , HOH A:1396 , HOH A:1433binding site for residue KH2 A 1203
4AC4SOFTWAREPHE A:486 , ASN A:572 , LEU A:573 , ASN A:574 , ARG A:704 , LEU A:729binding site for residue KH2 A 1204
5AC5SOFTWAREGLU A:682 , SER A:694binding site for residue NA A 1205
6AC6SOFTWAREMET A:581 , GLY A:582 , GLY A:584 , LYS A:585 , LYS A:796binding site for residue SO4 A 1206
7AC7SOFTWAREARG A:933 , GLN A:937binding site for residue SO4 A 1207
8AC8SOFTWAREARG A:475 , HIS A:478 , TRP A:742 , HOH A:1322binding site for residue SO4 A 1208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HZR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:604 -Pro A:605

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HZR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HZR)

(-) Exons   (0, 0)

(no "Exon" information available for 5HZR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..................hhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhh....eee...hhhhhhhhhhhhhh....eeeehhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhheeeeeeee.......hhhhhhhhhhhhh........hhhhhhhhhhh......hhhhhhhhhhhhhhhhh..ee..hhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh.......eeeee..........eeee..........eeeeeeee..hhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhh.................hhhhh.......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5hzr A  458 ANDEEAYLKLLDQAKDTRITHLLRQTDGFLKQLASSIDYYAVAHRIKEEVTEQASILVGGTLKEYQLKGLQWMLSLYNNNLNGILADEMGLGKTIQTISLITYLIEKKHQQGPYLVIVPLSTLTNWNLEFDKWAPSVAKVVYKGPPNARKMQQEKIRQGKFQVLLTTYEYIIKDRPLLSKIKWFHMIIDEGHRMSKLSATIQQYYSTRFRLILTGTPLQNNLAELWAMLNFVLPNIFKSAKTFDEWFNTPFAQDKMELTEEEQILVIRRLHKVLRPFLLRRLKKDVEKDLPDKTEKVIKCKFSALQARLYKQMVTHQKIAARGLSNMIMQLRKLCNHPFVFDEVENQMNPANVSNDLLWRTAGKFELLDRILPKYKATGHRVLMFFQMTAIMDIMEDFLRFRGLHYLRLDGTTKSEDRSELLRQFNQPDSPYFMFLLSTRALNLQTADTVIIYDSDIGQKNEVRILRLISSASVEEKILEGEQEEMDDDELNMILARNEEELAIFQKLDEERSRDPIYGTAPGCQGVPRLMTEDELPDIYLPVEEEVEMALG 1128
                                   467       477       487     ||532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682   ||  696       706       716       726       736       746 ||    760       770       780       790       800       810       820|      840       850       860       870       880       890       900       910       920       930       940       950||     964     ||989       999      1009|     1062      1072      1082      1092      1102      1112||    1126  
                                                             493|                                                                                                                                                          686|                                                      748|                                                                820|                                                                                                                     951|           970|                   1009|                                                        1113|          
                                                              529                                                                                                                                                           691                                                       753                                                                 831                                                                                                                      956            986                    1053                                                         1118
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HZR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HZR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HZR)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    KH2  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly A:604 - Pro A:605   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5hzr
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  G2QDW1_MYCTT | G2QDW1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  G2QDW1_MYCTT | G2QDW1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 5HZR)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HZR)