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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX PPARALPHA/AL26-29
 
Authors :  G. Pochetti, R. Montanari, D. Capelli, F. Loiodice, A. Laghezza, A. Lav
Date :  01 Feb 16  (Deposition) - 23 Nov 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A
Keywords :  Nuclear Receptor, Transcription Factor, Diabetes, Bundle Of Alpha- Helices, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Capelli, C. Cerchia, R. Montanari, F. Loiodice, P. Tortorella, A. Laghezza, L. Cervoni, G. Pochetti, A. Lavecchia
Structural Basis For Ppar Partial Or Full Activation Revealed By A Novel Ligand Binding Mode.
Sci Rep V. 6 34792 2016
PubMed-ID: 27708429  |  Reference-DOI: 10.1038/SREP34792

(-) Compounds

Molecule 1 - PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PPARA, NR1C1, PPAR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPAR-ALPHA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
165W1Ligand/Ion2-METHYL-2-[4-(NAPHTHALEN-1-YL)PHENOXY]PROPANOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:277 , SER A:280 , TYR A:314 , ILE A:354 , HIS A:440 , VAL A:444 , ILE A:447 , LYS A:448 , ALA A:454 , LEU A:456 , LEU A:460 , TYR A:464binding site for residue 65W A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HYK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:349 -Pro A:350

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HYK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HYK)

(-) Exons   (0, 0)

(no "Exon" information available for 5HYK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhh..eee.hhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeehhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hyk A 202 DLKSLAKRIYEAYLKNFNMNKVKARVILSPFVIHDMETLCMAEKTLVAKLVNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRDMY 468
                                   211       221       238       248       258||     273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463     
                                                      230|                  259|                                                                                                                                                                                                           
                                                       238                   265
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HYK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HYK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HYK)

(-) Gene Ontology  (70, 70)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:349 - Pro A:350   [ RasMol ]  
 

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  5hyk
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  PPARA_HUMAN | Q07869
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPARA_HUMAN | Q07869: 1i7g 1k7l 1kkq 2npa 2p54 2rew 2znn 3et1 3fei 3g8i 3kdt 3kdu 3sp6 3vi8 4bcr 4ci4 5azt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HYK)