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(-) Description

Title :  MONOMERIC IGG4 FC
 
Authors :  V. Y. Oganesyan, L. Shan, W. F. Dall'Acqua
Date :  28 Jan 16  (Deposition) - 17 Aug 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Biol. Unit 2:  A  (1x)
Keywords :  Biotechnology, Antibody Engineering, Monomeric Fc, Monovalent Targeting, Fusion Protein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Shan, M. Colazet, K. L. Rosenthal, X. Q. Yu, J. S. Bee, A. Ferguson, M. M. Damschroder, H. Wu, W. F. Dall'Acqua, P. Tsui, V. Oganesyan
Generation And Characterization Of An Igg4 Monomeric Fc Platform.
Plos One V. 11 60345 2016
PubMed-ID: 27479095  |  Reference-DOI: 10.1371/JOURNAL.PONE.0160345

(-) Compounds

Molecule 1 - IG GAMMA-4 CHAIN C REGION
    Chains: A
    Engineered: YES
    Expression System: MAMMALIAN EXPRESSION VECTOR PCK9
    Expression System Taxid: 943934
    Gene: IGHG4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A
Biological Unit 2 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 12)

Asymmetric Unit (7, 12)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUC1Ligand/IonALPHA-L-FUCOSE
3GAL1Ligand/IonBETA-D-GALACTOSE
4GOL1Ligand/IonGLYCEROL
5MAN2Ligand/IonALPHA-D-MANNOSE
6NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
7ZN2Ligand/IonZINC ION
Biological Unit 1 (6, 60)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2FUC6Ligand/IonALPHA-L-FUCOSE
3GAL6Ligand/IonBETA-D-GALACTOSE
4GOL6Ligand/IonGLYCEROL
5MAN12Ligand/IonALPHA-D-MANNOSE
6NAG24Ligand/IonN-ACETYL-D-GLUCOSAMINE
7ZN-1Ligand/IonZINC ION
Biological Unit 2 (6, 10)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUC1Ligand/IonALPHA-L-FUCOSE
3GAL1Ligand/IonBETA-D-GALACTOSE
4GOL1Ligand/IonGLYCEROL
5MAN2Ligand/IonALPHA-D-MANNOSE
6NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
7ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:285 , HOH A:653binding site for residue ZN A 510
2AC2SOFTWAREHIS A:310 , HIS A:433 , HIS A:435 , HOH A:671binding site for residue ZN A 511
3AC3SOFTWAREILE A:377 , VAL A:379 , THR A:393 , THR A:394 , HOH A:601 , HOH A:619binding site for residue GOL A 512
4AC4SOFTWAREPHE A:241 , PHE A:243 , PRO A:244 , LYS A:246 , GLU A:258 , THR A:260 , ASP A:265 , GLN A:295 , PHE A:296 , ASN A:297 , ARG A:301 , LYS A:334 , HOH A:602binding site for Poly-Saccharide residues NAG A 501 through GAL A 509 bound to ASN A 297

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:261 -A:321
2A:367 -A:425

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr A:373 -Pro A:374

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HVW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HVW)

(-) Exons   (0, 0)

(no "Exon" information available for 5HVW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..hhhhhhh.....eeeeeeeee......eeeeeee..eee...ee...ee.....eeeeeeee.hhhhhhh...eeeeeee..eeeeeeeee..........eeeee....hhhhh.eeeeeeeeeee.....eeeeee..eee..eee...ee.....eeeeeeeeeehhhhhh....eeeee................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hvw A 235 LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTFPPSQEEMTKNQVSLRCLVKGFYPSDIAVEWESNGQPENNYKTTKPVLDSDGSFRLESRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLS 444
                                   244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HVW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HVW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HVW)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        IGHG4_HUMAN | P01861: 1adq 1bbj 2fl5 3eo1 4b53 4c54 4c55 4d2n 5lg1

(-) Related Entries Specified in the PDB File

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