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(-) Description

Title :  THE CRYSTAL STRUCTURE OF NEURAMINIDASE FROM A/NORTHERN PINTAIL/WASHINGTON/40964/2014 INFLUENZA VIRUS
 
Authors :  H. Yang, P. J. Carney, Z. Guo, J. C. Chang, J. Stevens
Date :  27 Jan 16  (Deposition) - 13 Apr 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Neuraminidase, Influenza Virus, H5Nx, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, P. J. Carney, V. P. Mishin, Z. Guo, J. C. Chang, D. E. Wentworth, L. V. Gubareva, J. Stevens
Molecular Characterizations Of Surface Proteins Hemagglutinin And Neuraminidase From Recent H5Nx Avian Influenza Viruses.
J. Virol. V. 90 5770 2016
PubMed-ID: 27053557  |  Reference-DOI: 10.1128/JVI.00180-16

(-) Compounds

Molecule 1 - NEURAMINIDASE
    Chains: A, B, C, D
    EC Number: 3.2.1.18
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: NA
    Organism Scientific: INFLUENZA A VIRUS (A/NORTHERN PINTAIL/WASHINGTON/40964/2014(H5N2))
    Organism Taxid: 1589662
    Strain: A/NORTHERN PINTAIL/WASHINGTON/40964/2014(H5N2)

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 45)

Asymmetric/Biological Unit (4, 45)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2CA4Ligand/IonCALCIUM ION
3MAN16Ligand/IonALPHA-D-MANNOSE
4NAG21Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , GLY A:348 , HOH A:645binding site for residue CA A 501
02AC2SOFTWAREASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLY B:348binding site for residue CA B 501
03AC3SOFTWAREASP C:293 , GLY C:297 , ASP C:324 , GLY C:345binding site for residue CA C 501
04AC4SOFTWAREASP D:293 , GLY D:297 , ASP D:324 , GLY D:345 , HOH D:620binding site for residue CA D 501
05AC5SOFTWAREASN A:146 , TRP A:437 , ILE A:469binding site for Poly-Saccharide residues NAG A 502 through NAG A 503 bound to ASN A 146
06AC6SOFTWAREASN A:200 , HOH A:604 , HOH A:615 , HOH A:653 , LEU C:268 , GLN D:391 , VAL D:392 , ASN D:393 , ARG D:394 , TYR D:453 , GLY D:454 , THR D:455 , HOH D:619binding site for Poly-Saccharide residues NAG A 506 through MAN A 512 bound to ASN A 200
07AC7SOFTWAREASN A:234 , TYR A:284binding site for Poly-Saccharide residues NAG A 504 through NAG A 505 bound to ASN A 234
08AC8SOFTWAREASN B:146 , TRP B:437 , ILE B:469binding site for Poly-Saccharide residues NAG B 502 through NAG B 503 bound to ASN B 146
09AC9SOFTWAREASN B:200 , HOH B:601 , HOH B:604 , HOH B:674 , GLN C:391 , ASN C:393 , ARG C:394 , TYR C:453 , GLY C:454 , THR C:455binding site for Poly-Saccharide residues NAG B 505 through MAN B 511 bound to ASN B 200
10AD1SOFTWAREASN B:234binding site for Mono-Saccharide NAG B 504 bound to ASN B 234
11AD2SOFTWAREASN C:146 , TRP C:437 , ILE C:469binding site for Poly-Saccharide residues NAG C 502 through NAG C 503 bound to ASN C 146
12AD3SOFTWAREGLN A:391 , VAL A:392 , ASN A:393 , ARG A:394 , TYR A:453 , GLY A:454 , THR A:455 , HOH A:666 , ASN C:200 , HOH C:626 , HOH C:629 , HOH C:634 , PRO D:90 , PRO D:285 , SER D:416 , NAG D:504binding site for Poly-Saccharide residues NAG C 505 through MAN C 511 bound to ASN C 200
13AD4SOFTWAREASN C:234 , HOH C:654 , MAN D:509binding site for Mono-Saccharide NAG C 504 bound to ASN C 234
14AD5SOFTWAREASN D:146 , TRP D:437 , ILE D:469binding site for Poly-Saccharide residues NAG D 502 through NAG D 503 bound to ASN D 146
15AD6SOFTWAREGLN B:391 , VAL B:392 , ASN B:393 , ARG B:394 , TYR B:453 , GLY B:454 , THR B:455 , PRO C:90 , TYR C:284 , SER C:416 , NAG C:504 , ASN D:200 , GLN D:220 , HOH D:627 , HOH D:657binding site for Poly-Saccharide residues NAG D 505 through MAN D 511 bound to ASN D 200
16AD7SOFTWAREMAN C:509 , ASN D:86 , ASN D:234 , TYR D:284 , HOH D:601binding site for Mono-Saccharide NAG D 504 bound to ASN D 234

(-) SS Bonds  (36, 36)

Asymmetric/Biological Unit
No.Residues
1A:92 -A:417
2A:124 -A:129
3A:175 -A:193
4A:183 -A:230
5A:232 -A:237
6A:278 -A:291
7A:280 -A:289
8A:318 -A:337
9A:421 -A:447
10B:92 -B:417
11B:124 -B:129
12B:175 -B:193
13B:183 -B:230
14B:232 -B:237
15B:278 -B:291
16B:280 -B:289
17B:318 -B:337
18B:421 -B:447
19C:92 -C:417
20C:124 -C:129
21C:175 -C:193
22C:183 -C:230
23C:232 -C:237
24C:278 -C:291
25C:280 -C:289
26C:318 -C:337
27C:421 -C:447
28D:92 -D:417
29D:124 -D:129
30D:175 -D:193
31D:183 -D:230
32D:232 -D:237
33D:278 -D:291
34D:280 -D:289
35D:318 -D:337
36D:421 -D:447

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Tyr A:284 -Pro A:285
2Thr A:325 -Pro A:326
3Asn A:346 -Pro A:347
4Arg A:430 -Pro A:431
5Tyr B:284 -Pro B:285
6Thr B:325 -Pro B:326
7Asn B:346 -Pro B:347
8Arg B:430 -Pro B:431
9Tyr C:284 -Pro C:285
10Thr C:325 -Pro C:326
11Asn C:346 -Pro C:347
12Arg C:430 -Pro C:431
13Tyr D:284 -Pro D:285
14Thr D:325 -Pro D:326
15Asn D:346 -Pro D:347
16Arg D:430 -Pro D:431

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HUK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HUK)

(-) Exons   (0, 0)

(no "Exon" information available for 5HUK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhhh....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeeeee..eeeeeeee..eeeeeee..............eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5huk A  82 AEYRNWSKPQCQITGFAPFSKDNSIRLSAGGDIWVTREPYVSCSPGKCYQFALGQGTTLNNKHSNGTIHDRIPHRTLLMSELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGDDRNATASFIYDGMLADSIGSWSQNILRTQESECVCINGTCTVVMTDGSASGRADTRILFIKEGKIVHISPLSGSAQHIEECSCYPRYPDVRCVCRDNWKGSNRPVIDINMADYSIDSSYVCSGLVGDTPRNDDSSSSSNCRDPNNERGNPGVKGWAFDNGNDVWMGRTISEDSRSGYETFRVTDGWTTANSKSQVNRQIIVDNNNWSGYSGIFSVEGKSCINRCFYVELIRGRPQETRVWWTSNSIVVFCGTSGTYGTGSWPDGANINFMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        


Chain B from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee............eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeeeee..eeeeeeee..eeeeeee..............eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5huk B  82 AEYRNWSKPQCQITGFAPFSKDNSIRLSAGGDIWVTREPYVSCSPGKCYQFALGQGTTLNNKHSNGTIHDRIPHRTLLMSELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGDDRNATASFIYDGMLADSIGSWSQNILRTQESECVCINGTCTVVMTDGSASGRADTRILFIKEGKIVHISPLSGSAQHIEECSCYPRYPDVRCVCRDNWKGSNRPVIDINMADYSIDSSYVCSGLVGDTPRNDDSSSSSNCRDPNNERGNPGVKGWAFDNGNDVWMGRTISEDSRSGYETFRVTDGWTTANSKSQVNRQIIVDNNNWSGYSGIFSVEGKSCINRCFYVELIRGRPQETRVWWTSNSIVVFCGTSGTYGTGSWPDGANINFMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        


Chain C from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhhh....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeeeee..eeeeeeee..eeeeeee.....eee......eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5huk C  82 AEYRNWSKPQCQITGFAPFSKDNSIRLSAGGDIWVTREPYVSCSPGKCYQFALGQGTTLNNKHSNGTIHDRIPHRTLLMSELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGDDRNATASFIYDGMLADSIGSWSQNILRTQESECVCINGTCTVVMTDGSASGRADTRILFIKEGKIVHISPLSGSAQHIEECSCYPRYPDVRCVCRDNWKGSNRPVIDINMADYSIDSSYVCSGLVGDTPRNDDSSSSSNCRDPNNERGNPGVKGWAFDNGNDVWMGRTISEDSRSGYETFRVTDGWTTANSKSQVNRQIIVDNNNWSGYSGIFSVEGKSCINRCFYVELIRGRPQETRVWWTSNSIVVFCGTSGTYGTGSWPDGANINFMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        


Chain D from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhhh....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeee......eeeeee..eeeeeee.....eee......eee..eeeeeeeeee...eeeeeeeeee..eeeeeee.......eeeeeeeee..eeeeeeee.......eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeee...........eeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5huk D  82 AEYRNWSKPQCQITGFAPFSKDNSIRLSAGGDIWVTREPYVSCSPGKCYQFALGQGTTLNNKHSNGTIHDRIPHRTLLMSELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGDDRNATASFIYDGMLADSIGSWSQNILRTQESECVCINGTCTVVMTDGSASGRADTRILFIKEGKIVHISPLSGSAQHIEECSCYPRYPDVRCVCRDNWKGSNRPVIDINMADYSIDSSYVCSGLVGDTPRNDDSSSSSNCRDPNNERGNPGVKGWAFDNGNDVWMGRTISEDSRSGYETFRVTDGWTTANSKSQVNRQIIVDNNNWSGYSGIFSVEGKSCINRCFYVELIRGRPQETRVWWTSNSIVVFCGTSGTYGTGSWPDGANINFMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HUK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HUK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HUK)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5HUK)

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5huk