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(-) Description

Title :  COMPUTATIONALLY DESIGNED CYCLIC DIMER ANK3C2_1
 
Authors :  D. Cascio, D. E. Mcnamara, J. A. Fallas, D. Baker, T. O. Yeates
Date :  24 Jan 16  (Deposition) - 12 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,F  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Protein Design, Designed Oligomeric Interface, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Fallas, G. Ueda, W. Sheffler, V. Nguyen, D. E. Mcnamara, B. Sankaran, J. H. Pereira, F. Parmeggiani, T. J. Brunette, D. Cascio, T. R. Yeates, P. Zwart, D. Baker
Computational Design Of Self-Assembling Cyclic Protein Homo-Oligomers.
Nat Chem V. 9 353 2017
PubMed-ID: 28338692  |  Reference-DOI: 10.1038/NCHEM.2673

(-) Compounds

Molecule 1 - ANK3C2_1
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21 NESG
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A    F  
Biological Unit 2 (1x):  B  E   
Biological Unit 3 (1x):   CD    
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HRY)

(-) Sites  (0, 0)

(no "Site" information available for 5HRY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HRY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HRY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HRY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HRY)

(-) Exons   (0, 0)

(no "Exon" information available for 5HRY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hry A   5 KRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154     


Chain B from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hry B   4 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153      


Chain C from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.hhhhhh.........hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hry C   5 KRLIEAAENGNKDRVKVNASDSDGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    14     || 32        42        52        62        72        82        92       102       112       122       132       142       152       
                                          20|                                                                                                                                  
                                           29                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hry D   3 LGKRLIEAAENGNKDRVKDLLENGADVNADGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    12        22        35        45        55        65        75        85        95       105       115       125       135       145       155    
                                                       31|                                                                                                                            
                                                        35                                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.hhhhhhhhhhh.........hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hry E   5 KRLIEAAENGNKDRVKDLLENGADVNASGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    14        24       |37        47        57        67        77        87        97       107       117       127       137       147       157  
                                                      32|                                                                                                                           
                                                       36                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hry F   4 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153      


Chain G from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.hhhhhhhh......hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hry G   5 KRLIEAAENGNKDRVKDLVNASDKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    14       |30  ||    43        53        63        73        83        93       103       113       123       133       143       153      
                                            22|  33|                                                                                                                          
                                             29   37                                                                                                                          


Chain H from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hry H   3 LGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGADPNAKDSDGKTPLHLAAENGHEEVVILLLAMGADPNTSDSDGRTPLDLAREHGNEEVVKVLEDHGG 159
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HRY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HRY)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5HRY)

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