5HQP - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE ERP44-PEROXIREDOXIN 4 COMPLEX

Authors :   K. Yang, D. F. Li, X. Wang, C. C. Wang

Date :   22 Jan 16 (Deposition) - 12 Oct 16 (Release) - 16 Nov 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Chaperone, Gst Fold, Oxidoreductase, Beta/Alpha/Beta Sandwich, Oxidoreductase-Chaperone Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Yang, D. F. Li, X. Wang, J. Liang, R. Sitia, C. C. Wang, X. Wang
Crystal Structure Of The Erp44-Peroxiredoxin 4 Complex Reveals The Molecular Mechanisms Of Thiol-Mediated Protein Retention.
Structure V. 24 1755 2016
PubMed-ID: 27642162 | Reference-DOI: 10.1016/J.STR.2016.08.002

Molecule 1 - PEROXIREDOXIN-4
	Chains	:	A, B
	EC Number	:	1.11.1.15
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE-30
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PRDX4
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ANTIOXIDANT ENZYME AOE372,AOE37-2,PEROXIREDOXIN IV,PRX-IV, THIOREDOXIN PEROXIDASE AO372,THIOREDOXIN-DEPENDENT PEROXIDE REDUCTASE A0372

Molecule 2 - ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ERP44, KIAA0573, TXNDC4, UNQ532/PRO1075
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ERP44,THIOREDOXIN DOMAIN-CONTAINING PROTEIN 4

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 5HQP)

(no "Site" information available for 5HQP)

Asymmetric/Biological Unit

No.	Residues
1	A:245	-	C:29
2	B:245	-	D:29
3	C:272	-	C:289

Asymmetric/Biological Unit

No.	Residues
1	Val B:221	-	Gly B:222
2	Phe C:50	-	Pro C:51
3	Tyr C:78	-	Pro C:79
4	Asp C:191	-	Met C:192
5	Cys C:289	-	Pro C:290
6	His C:328	-	Arg C:329
7	Arg C:329	-	Glu C:330
8	Glu C:330	-	Phe C:331
9	Phe D:50	-	Pro D:51
10	Tyr D:78	-	Pro D:79
11	Asp D:191	-	Met D:192

(no "SAP(SNP)/Variant" information available for 5HQP)

(no "PROSITE Motif" information available for 5HQP)

(no "Exon" information available for 5HQP)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee..eeeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh...ee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hqp A  76 LSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVSPTEIIAFGDRLEEFRSINTEVVACSVDSQFEHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 256
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255

Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee..eeeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhh........eee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hqp B  76 LSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVSPTEIIAFGDRLEEFRSINTEVVACSVDSQFEHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 250
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245

Chain C from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....hhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhh......eeeeeee...hhhhhhhh...ee.eeeee..............hhhhhhhhhhhhhh...ee...............eeeee.....hhhhhhhhhhhhhhh...eeeee.....eeeee................hhhhhhhhhhhhhh..eeeehhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhh.........eeeee....eee..hhhhhhh.hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hqp C   1 EITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREF 331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328   
                                                                                                                                                                                                  169|                                                                                                                                                         
                                                                                                                                                                                                   178

Chain D from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhh...ee.eeeeee..ee.........hhhhhhhhhhhh.....ee....hhhhhh.....eeeee.....hhhhhhhhhhhhhh....eeee......eeeee.........ee......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hqp D   2 ITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       179       189       199       209    
                                                                                                                                                                                                 169|                                   
                                                                                                                                                                                                  178

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5HQP)

(no "CATH Domain" information available for 5HQP)

(no "Pfam Domain" information available for 5HQP)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5hqp)

	Sites
(no "Sites" information available for 5hqp)

	Cis Peptide Bonds
		Arg C:329 - Glu C:330	[ RasMol ]
		Asp C:191 - Met C:192	[ RasMol ]
		Asp D:191 - Met D:192	[ RasMol ]
		Cys C:289 - Pro C:290	[ RasMol ]
		Glu C:330 - Phe C:331	[ RasMol ]
		His C:328 - Arg C:329	[ RasMol ]
		Phe C:50 - Pro C:51	[ RasMol ]
		Phe D:50 - Pro D:51	[ RasMol ]
		Tyr C:78 - Pro C:79	[ RasMol ]
		Tyr D:78 - Pro D:79	[ RasMol ]
		Val B:221 - Gly B:222	[ RasMol ]

Jmol
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	5hqp
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ERP44_HUMAN \| Q9BS26
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	PRDX4_HUMAN \| Q13162
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	1.11.1.15
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
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Access by UniProt ID/Accession number
	ERP44_HUMAN \| Q9BS26
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PRDX4_HUMAN \| Q13162
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	ERP44_HUMAN \| Q9BS26	:	2r2j 5gu6 5gu7
	PRDX4_HUMAN \| Q13162	:	2pn8 3tjb 3tjf 3tjg 3tjj 3tjk 3tkp 3tkq 3tkr 3tks 4rqx

2r2j	INDIVIDUAL STRUCTURE OF ERP44
3tjg	THE OXIDIZED FORM OF PRX4
3tkp	THE REDUCED FORM OF PRX4

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (3, 3)

Cis Peptide Bonds (11, 11)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (36, 40)

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