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(-) Description

Title :  WD40 DOMAIN OF HUMAN E3 UBIQUITIN LIGASE COP1 (RFWD2)
 
Authors :  S. Uljon, S. C. Blacklow
Date :  21 Jan 16  (Deposition) - 20 Apr 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Wd40 Domain E3 Ligase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Uljon, X. Xu, I. Durzynska, S. Stein, G. Adelmant, J. A. Marto, W. S. Pear, S. C. Blacklow
Structural Basis For Substrate Selectivity Of The E3 Ligase Cop1.
Structure V. 24 687 2016
PubMed-ID: 27041596  |  Reference-DOI: 10.1016/J.STR.2016.03.002

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE RFWD2
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: RFWD2, COP1, RNF200
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CONSTITUTIVE PHOTOMORPHOGENESIS PROTEIN 1 HOMOLOG,HCOP1,RING FINGER AND WD REPEAT DOMAIN PROTEIN 2,RING FINGER PROTEIN 200

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HQG)

(-) Sites  (0, 0)

(no "Site" information available for 5HQG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HQG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:589 -Gln A:590

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HQG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HQG)

(-) Exons   (0, 0)

(no "Exon" information available for 5HQG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh...eeeeeeeee.........eeeeee.....eeeeee...eeeeeehhhhh........eeee....eeeeee......eeeeee....eeeee.....eeeee......eeeeee......eeeeee...eeeeee.......eeee....eeeeee......eeeeee....eeeee........eee......eeeeee....eeeeee...eeeeee.......eee...........eeee..eeee.....eeeeee.......eeee.......eeeeee.........eeeeee...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hqg A 391 EFQECLSKFTRYNSVRPLATLSYALYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV 731
                                   400       410   ||  422       432       442       452    || 464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       697       707       717       727    
                                                 414|                                     457|                                                                                                                                                                                                                            683|                                  
                                                  417                                      460                                                                                                                                                                                                                             697
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HQG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HQG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HQG)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:589 - Gln A:590   [ RasMol ]  
 

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  5hqg
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  RFWD2_HUMAN | Q8NHY2
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  6.3.2.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RFWD2_HUMAN | Q8NHY2: 5igq

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HQG)