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(-) Description

Title :  CRYSTAL STRUCTURE OF PYROCOCCUS ABYSSI TRM5A
 
Authors :  W. Xie, C. Wang, Q. Jia
Date :  13 Jan 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Methyltransferase, Trm5A, Sam, Trna Modification, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wang, Q. Jia, R. Chen, Y. Wei, J. Li, J. Ma, W. Xie
Crystal Structures Of The Bifunctional Trna Methyltransferase Trm5A
Sci Rep V. 6 33553 2016
PubMed-ID: 27629654  |  Reference-DOI: 10.1038/SREP33553

(-) Compounds

Molecule 1 - TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE TRM5A
    Chains: A
    EC Number: 2.1.1.228
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TRM5A, PYRAB01130, PAB2272
    Organism Scientific: PYROCOCCUS ABYSSI (STRAIN GE5 / ORSAY)
    Organism Taxid: 272844
    Strain: GE5 / ORSAY
    Synonym: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HJJ)

(-) Sites  (0, 0)

(no "Site" information available for 5HJJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HJJ)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HJJ)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh........eeeeeehhhhhhhhhhhhhhh........ee...eeeee..hhhhhhhh..eeee.............hhhhhhhhhhhh.....eee..eeee..hhhhhhhhhhhhhhhhhhh....eeeeeeeee....eeeeeeeee....eeeeee..eeeeee......hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhh..eeeeee.......hhhhhhhheeeeeeeeeeee..hhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hjj A -14 HHHHHHLEVLFQGPHMSGVKVRREDAKKVLELLKSVGILDGKRKAIRDEKYVIFPVTDTNIAKSLGLEVVDVELPMRPERQIYKNLEDLLPREIFKKLGRLDIVGDIAIVSIPDEILSEREVIVSAIRKLYPKVKVIARRGFHSGLYRIRELEVIWGENRLHTIHKENGVLIKVDLSKVFFNPRMKGERYRIAQLVNDGERILVPFAGVIPYPLVIARFKNVEVYAVEINEFAVKLAEENLELNRDRLKGKIKIIHGDVFEVLPNLPNFDRVVSPTPKGVDALSLTLSKAEKFLHYYDFVHESEIERFRERVLEECRRQGKECRVSVRKVSDYKPHVYKVCADVEILS 333
                                    -5         5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HJJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HJJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HJJ)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TAW22_PYRAB | Q9V2G1: 5hji 5hjk 5hjm

(-) Related Entries Specified in the PDB File

5hji 5hjk 5hjm