Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE TSC2 N-TERMINUS
 
Authors :  R. Zech, S. Kiontke, D. Kummel
Date :  12 Jan 16  (Deposition) - 10 Aug 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Complex, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zech, S. Kiontke, U. Mueller, A. Oeckinghaus, D. Kummel
Structure Of The Tuberous Sclerosis Complex 2 (Tsc2) N Terminus Provides Insight Into Complex Assembly And Tuberou Sclerosis Pathogenesis.
J. Biol. Chem. V. 291 20008 2016
PubMed-ID: 27493206  |  Reference-DOI: 10.1074/JBC.M116.732446
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GTPASE ACTIVATOR-LIKE PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CTHT_0061860
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
    Synonym: TSC2

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HIU)

(-) Sites  (0, 0)

(no "Site" information available for 5HIU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HIU)

(-) Exons   (0, 0)

(no "Exon" information available for 5HIU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hiu A  88 SPEQADLVAKLKNGHLSERVLAANKLRFAVVDFPLNPVHAIWHAAKDMIHPENPDNARQASWELLIECVKYPNSTELERSEYFHTLTGPAHSKDFCYQLVALEQLTNHGRNIAGFYYEMFPLLTLWLNQAYRAARDARKLALARPASPEDKNLSQLFALVKDVIKFNFKFATDDVIAGLIDMLLKICMLTSVEDDLRACIHVIESLVTFGSIPTNKLKYCIQVLSSIHCLVPSLQKEAWHTISIICRSHHGQSTVRILLDFLRSYSPNPDKNREKDTVRDVRGALSVLQKLLRKTAEKGYPQVPLSLLVGGLANVSKSSSTRVATEILRLINSLFHGNINPILVEEHWEPIFDVAAQCATKAPTVAKENVSLQLKHLILRVENLIVHQGPELLQRDDCMKFLIRVQH 527
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227   ||  248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428      |441       451       461 ||    490       500       510       520       
                                                                                                                                                                         231|                                                                                                                                                                                             435|                     463|  482|                                      
                                                                                                                                                                          243                                                                                                                                                                                              439                      477   489                                      


Chain B from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhh.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hiu B  88 SPEQADLVAKLKNGHLSERVLAANKLRFAVVDFPLNPVHAIWHAAKDMIHPENPDNARQASWELLIECVKYPNSTELERSEYFHTLTGPAHSKDFCYQLVALEQLTNHGRNIAGFYYEMFPLLTLWLNQAYRAARDARKLALAPASPEDKNLSQLFALVKDVIKFNFKFATDDVIAGLIDMLLKICMLTSVEDDLRACIHVIESLVTFGSIPTNKLKYCIQVLSSIHCLVPSLQKEAWHTISIICRSHHGQSTVRILLDFLRSYSPNPDKNREKDTVRDVRGALSVLQKLLRKTAEKGYPQVPLSLLVGGLANVSKSSSTRVATEILRLINSLFHGNINPILVEEHWEPIFDVAAQCATKALPTVAKENVSLQLKHLILRVENLIVHQGPELLQRDDCMKFLIRVQH 527
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227  ||   249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429     ||442       452       462||     490       500       510       520       
                                                                                                                                                                        230|                                                                                                                                                                                             435|                     463|   482|                                      
                                                                                                                                                                         243                                                                                                                                                                                              439                      476    489                                      


Chain C from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhh..ee...hhhhh...eehhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hiu C  88 SPEQADLVAKLKNGHLSERVLAANKLRFAVVDFPLNPVHAIWHAAKDMIHPENPDNARQASWELLIECVKYPNSTELERSEYFHTLTGPAHSKDFCYQLVALEQLTNHGRNIAGFYYEMFPLLTLWLNQAYRAARDARKLAPASPEDKNLSQLFALVKDVIKFNFKFATDDVIAGLIDMLLKICMLTSVEDDLRACIHVIESLVTFGSIPTNKLKYCIQVLSSIHCLVPSLQKEAWHTISIICRSHHGQSTVRILLDFLRSYKDTVRDVRGALSVLQKLLRKTAEKGYPQVPLSLLVGGLANVSKSSSTRVATEILRLINSLFHGNINPILVEEHWEPIFDVAAQCATKAVTLPLPTVAKEEPVVEDNVSLQLKHLILRVENLIVHLLQRDDCMKFLIRVQH 527
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227||     251       261       271       281       291       301       311       321       331       341       351       361 ||    380       390       400       410       420       430    || 443       453       463  ||   481       491       501     ||515       525  
                                                                                                                                                                      228|                                                                                                                     363|                                                           435|                        466|                             507|               
                                                                                                                                                                       243                                                                                                                      373                                                            439                         475                              512               


Chain D from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhh..ee...hhhhh...eehhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hiu D  88 SPEQADLVAKLKNGHLSERVLAANKLRFAVVDFPLNPVHAIWHAAKDMIHPENPDNARQASWELLIECVKYPNSTELERSEYFHTLTGPAHSKDFCYQLVALEQLTNHGRNIAGFYYEMFPLLTLWLNQAYRAARDARKLAPASPEDKNLSQLFALVKDVIKFNFKFATDDVIAGLIDMLLKICMLTSVEDDLRACIHVIESLVTFGSIPTNKLKYCIQVLSSIHCLVPSLQKEAWHTISIICRSHHGQSTVRILLDFLRSYKDTVRDVRGALSVLQKLLRKTAEKGYPQVPLSLLVGGLANVSKSSSTRVATEILRLINSLFHGNINPILVEEHWEPIFDVAAQCATKAVTLPLPTVAKEEPVVEDNVSLQLKHLILRVENLIVLLQRDDCMKFLIRVQH 527
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227||     251       261       271       281       291       301       311       321       331       341       351       361 ||    380       390       400       410       420       430    || 443       453       463  ||   481       491       501    || 516       526 
                                                                                                                                                                      228|                                                                                                                     363|                                                           435|                        466|                            506|               
                                                                                                                                                                       243                                                                                                                      373                                                            439                         475                             512
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HIU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HIU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HIU)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5hiu)
 
  Sites
(no "Sites" information available for 5hiu)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5hiu)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5hiu
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  G0SFF5_CHATD | G0SFF5
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  G0SFF5_CHATD | G0SFF5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 5HIU)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HIU)